Miyakogusa Predicted Gene

Lj0g3v0318559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318559.1 Non Characterized Hit- tr|I3SWD9|I3SWD9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,DYNEIN_LIGHT_1,Dynein light chain, type 1/2, conserved
site; no description,Dynein light chain, type,CUFF.21564.1
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g120150.1 | dynein light chain type 1 family protein | HC ...   177   3e-45
Medtr8g464690.1 | dynein light chain type 1 family protein | HC ...    96   1e-20
Medtr4g107350.1 | dynein light chain type 1 family protein | HC ...    89   2e-18
Medtr4g114060.2 | dynein light chain type 1 family protein | HC ...    79   1e-15
Medtr4g114060.1 | dynein light chain type 1 family protein | HC ...    79   1e-15
Medtr1g031880.1 | dynein light chain type 1 family protein | HC ...    79   2e-15
Medtr2g101850.1 | cytoplasmic dynein light chain | HC | chr2:438...    75   2e-14
Medtr8g104900.1 | dynein light chain type 1 family protein | HC ...    74   4e-14
Medtr6g087770.1 | cytoplasmic dynein light chain | HC | chr6:330...    70   6e-13

>Medtr4g120150.1 | dynein light chain type 1 family protein | HC |
           chr4:49807388-49810451 | 20130731
          Length = 130

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/86 (96%), Positives = 83/86 (96%)

Query: 57  KKVIIKSADMLPDMQKEAVDIAVAAFERLNVEKDVAEHIKKEFDKRHGPTWHCIVGRNFG 116
           KKVIIKSADMLPDMQKEAVDIAV AFER NVEKDVAE IKKEFDKRHGPTWHCIVGRNFG
Sbjct: 45  KKVIIKSADMLPDMQKEAVDIAVVAFERHNVEKDVAETIKKEFDKRHGPTWHCIVGRNFG 104

Query: 117 SYVTHETNHFVYFYLDQKAVLLFKSG 142
           SYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 105 SYVTHETNHFVYFYLDQKAVLLFKSG 130


>Medtr8g464690.1 | dynein light chain type 1 family protein | HC |
           chr8:22911007-22910269 | 20130731
          Length = 109

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLNVEK--DVAEHIKKEFDKRHGPTWHCIVGRNF 115
           K +I   DML  MQ++A+D+A  A +  +V +  D+A  IKKEFD+ HGP W CIVG +F
Sbjct: 5   KAVIGETDMLQTMQQDALDLACKALDFYDVTEAIDIARFIKKEFDRVHGPGWQCIVGTDF 64

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           GS+VTH +  F+YF +   A+LLFK 
Sbjct: 65  GSFVTHCSGCFIYFCIGSMAILLFKG 90


>Medtr4g107350.1 | dynein light chain type 1 family protein | HC |
           chr4:44373665-44370969 | 20130731
          Length = 307

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 63  SADMLPDMQKEAVDIAVAAFERLN--VEKDVAEHIKKEFDKRHGPTWHCIVGRNFGSYVT 120
           SADM P MQ  AVD A  AF+ +     K +A  +KKEFD  +GP WHCIVG +FGS+VT
Sbjct: 220 SADMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVT 279

Query: 121 HETNHFVYFYLDQKA-VLLFKS 141
           H    F+YF +DQK  +L+FK+
Sbjct: 280 HSVGGFLYFSMDQKLYILIFKT 301


>Medtr4g114060.2 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLN--VEKDVAEHIKKEFDKRHGPTWHCIVGRNF 115
           KV++  +DM   MQ  A   A   ++ L     K +A +IKKEFDK +GP WHCIVG +F
Sbjct: 155 KVLV--SDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSF 212

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           GS+VTH T  F+YF ++   +LLFK+
Sbjct: 213 GSFVTHSTGCFLYFSMENLYILLFKT 238


>Medtr4g114060.1 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLN--VEKDVAEHIKKEFDKRHGPTWHCIVGRNF 115
           KV++  +DM   MQ  A   A   ++ L     K +A +IKKEFDK +GP WHCIVG +F
Sbjct: 155 KVLV--SDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSF 212

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           GS+VTH T  F+YF ++   +LLFK+
Sbjct: 213 GSFVTHSTGCFLYFSMENLYILLFKT 238


>Medtr1g031880.1 | dynein light chain type 1 family protein | HC |
           chr1:11198739-11201405 | 20130731
          Length = 146

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 59  VIIKSADMLPDMQKEAVDIAVAAFERLNVEKDVAEHI----KKEFDKRHGPTWHCIVGRN 114
           + +K+ DM   +QK A   A    + +  +K  ++H+    KKEFD  +GP WHCIVG +
Sbjct: 53  IHVKACDMSLPLQKHAFQFARDHLDSMPTKKPDSKHLALSLKKEFDSCYGPAWHCIVGTS 112

Query: 115 FGSYVTHETNHFVYFYLDQKAVLLFKSG 142
           FGSYVTH    FVYF +D+  +LLF++ 
Sbjct: 113 FGSYVTHSVGGFVYFSIDKVHILLFRTA 140


>Medtr2g101850.1 | cytoplasmic dynein light chain | HC |
           chr2:43819163-43818213 | 20130731
          Length = 91

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLNV--EKDVAEHIKKEFDKRHGPTWHCIVGRNF 115
           K +I+  DM   MQ +A+  A  A +  +V   K +A HIKKEFD R+G  W C+VG +F
Sbjct: 5   KAMIEDTDMPTKMQIQAMAYASEALDLYDVIDCKSIAAHIKKEFDARYGGGWQCVVGSSF 64

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           G + TH    F+YF L+    L+FK 
Sbjct: 65  GCFFTHSKGTFIYFTLETLNFLIFKG 90


>Medtr8g104900.1 | dynein light chain type 1 family protein | HC |
           chr8:44226350-44232514 | 20130731
          Length = 133

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 59  VIIKSADMLPDMQKEAVDIAVAAFERLNVEK----DVAEHIKKEFDKRHGPTWHCIVGRN 114
           V I++ DM   +Q  A   A    + +  +K     +A  +KKEFD  +GP WHCIVG +
Sbjct: 39  VKIRACDMPLTLQNHAFRCARHLLDSMPPKKLHTKRLALTLKKEFDSTYGPAWHCIVGTS 98

Query: 115 FGSYVTHETNHFVYFYLDQKAVLLFKS 141
           FGSYVTH    F+YF +D+  +LLFK+
Sbjct: 99  FGSYVTHSVGGFLYFSIDKVHILLFKT 125


>Medtr6g087770.1 | cytoplasmic dynein light chain | HC |
           chr6:33030451-33029408 | 20130731
          Length = 93

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLNVE--KDVAEHIKKEFDKRHGPTWHCIVGRNF 115
           K +++  DM   MQ +A+  A  A +  +V   + +A +IKKEFDK +G  W C+VG NF
Sbjct: 5   KGVVEETDMPLKMQIQAMSYASQALDLYDVCDCRSIAGYIKKEFDKNYGSRWQCVVGSNF 64

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           G + +H    F+YF L+    L++K 
Sbjct: 65  GCFFSHTPGTFIYFSLETLKFLIYKG 90