Miyakogusa Predicted Gene

Lj0g3v0318429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318429.1 Non Characterized Hit- tr|D7M307|D7M307_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,63.38,3e-18,UNCHARACTERIZED,Vesicle transport protein,
SFT2-like; Got1,Vesicle transport protein,
Got1/SFT2-like,gene.g24779.t1.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g064950.1 | Got1/SFT2-like vescicle transporter family pro...   144   3e-35
Medtr1g026920.1 | Got1/SFT2-like vescicle transporter family pro...   100   2e-22

>Medtr6g064950.1 | Got1/SFT2-like vescicle transporter family
           protein | HC | chr6:24054776-24057625 | 20130731
          Length = 123

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 71/72 (98%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MMLDPVRIYATAIYIASMIIALFCALYVHNKLLT LAIILEFGALVWYSLSYIPFARSMV
Sbjct: 52  MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTFLAIILEFGALVWYSLSYIPFARSMV 111

Query: 61  SKIMVSCFDTEF 72
           SKIMVSCFDTEF
Sbjct: 112 SKIMVSCFDTEF 123


>Medtr1g026920.1 | Got1/SFT2-like vescicle transporter family
           protein | HC | chr1:8852447-8858166 | 20130731
          Length = 162

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 60/72 (83%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MM DPVR++ATAIY+  ++IAL CAL +H+K+LTLLAII+E  AL+WYSLSYIPFAR MV
Sbjct: 91  MMFDPVRVFATAIYLGCVVIALICALLIHSKVLTLLAIIIEICALMWYSLSYIPFARRMV 150

Query: 61  SKIMVSCFDTEF 72
           S++M+   DTE 
Sbjct: 151 SELMIRLCDTEL 162