Miyakogusa Predicted Gene

Lj0g3v0318179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318179.1 Non Characterized Hit- tr|K3XMI8|K3XMI8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si002916,35.67,5e-18,zf-HIT,Zinc finger, HIT-type; ZF_HIT,Zinc
finger, HIT-type; SUBFAMILY NOT NAMED,NULL; THYROID
RECEPT,CUFF.21528.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069150.2 | HIT zinc finger protein | HC | chr1:29722156-2...   197   2e-51
Medtr1g069150.1 | HIT zinc finger protein | HC | chr1:29722156-2...   197   2e-51
Medtr1g069150.4 | HIT zinc finger protein | HC | chr1:29722211-2...   159   1e-39
Medtr1g069150.3 | HIT zinc finger protein | HC | chr1:29722211-2...   159   1e-39

>Medtr1g069150.2 | HIT zinc finger protein | HC |
           chr1:29722156-29725512 | 20130731
          Length = 147

 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 116/147 (78%), Gaps = 15/147 (10%)

Query: 1   MGPRQCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKPPSSEVKTS---------- 50
           MGP+QCQ+C+  QSKYKC  CYL YCSL CFKKHKE PCV P  SE KT+          
Sbjct: 1   MGPKQCQICHKAQSKYKCPKCYLLYCSLACFKKHKELPCVNPTPSETKTADLESHVEKPS 60

Query: 51  ----AALESPVKKP-IVIDEPIEVLQKFQLEAIASSSEIRDALNDQALQELICRIDCSPN 105
               A +E+PV+KP +V+D+  EVLQ+FQLEAIASSSEIRDALND+ALQELIC+IDCS N
Sbjct: 61  VVDNAVVEAPVEKPLVVVDKTGEVLQQFQLEAIASSSEIRDALNDKALQELICQIDCSSN 120

Query: 106 AENEFDKAMAEEAFRLFTDKILSTINP 132
           AENE DKAMA+EAFRLFT+KILSTINP
Sbjct: 121 AENELDKAMADEAFRLFTNKILSTINP 147


>Medtr1g069150.1 | HIT zinc finger protein | HC |
           chr1:29722156-29725512 | 20130731
          Length = 147

 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 116/147 (78%), Gaps = 15/147 (10%)

Query: 1   MGPRQCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKPPSSEVKTS---------- 50
           MGP+QCQ+C+  QSKYKC  CYL YCSL CFKKHKE PCV P  SE KT+          
Sbjct: 1   MGPKQCQICHKAQSKYKCPKCYLLYCSLACFKKHKELPCVNPTPSETKTADLESHVEKPS 60

Query: 51  ----AALESPVKKP-IVIDEPIEVLQKFQLEAIASSSEIRDALNDQALQELICRIDCSPN 105
               A +E+PV+KP +V+D+  EVLQ+FQLEAIASSSEIRDALND+ALQELIC+IDCS N
Sbjct: 61  VVDNAVVEAPVEKPLVVVDKTGEVLQQFQLEAIASSSEIRDALNDKALQELICQIDCSSN 120

Query: 106 AENEFDKAMAEEAFRLFTDKILSTINP 132
           AENE DKAMA+EAFRLFT+KILSTINP
Sbjct: 121 AENELDKAMADEAFRLFTNKILSTINP 147


>Medtr1g069150.4 | HIT zinc finger protein | HC |
           chr1:29722211-29725475 | 20130731
          Length = 130

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 96/122 (78%), Gaps = 15/122 (12%)

Query: 26  CSLVCFKKHKESPCVKPPSSEVKTS--------------AALESPVKKP-IVIDEPIEVL 70
           CSL CFKKHKE PCV P  SE KT+              A +E+PV+KP +V+D+  EVL
Sbjct: 9   CSLACFKKHKELPCVNPTPSETKTADLESHVEKPSVVDNAVVEAPVEKPLVVVDKTGEVL 68

Query: 71  QKFQLEAIASSSEIRDALNDQALQELICRIDCSPNAENEFDKAMAEEAFRLFTDKILSTI 130
           Q+FQLEAIASSSEIRDALND+ALQELIC+IDCS NAENE DKAMA+EAFRLFT+KILSTI
Sbjct: 69  QQFQLEAIASSSEIRDALNDKALQELICQIDCSSNAENELDKAMADEAFRLFTNKILSTI 128

Query: 131 NP 132
           NP
Sbjct: 129 NP 130


>Medtr1g069150.3 | HIT zinc finger protein | HC |
           chr1:29722211-29725475 | 20130731
          Length = 130

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 96/122 (78%), Gaps = 15/122 (12%)

Query: 26  CSLVCFKKHKESPCVKPPSSEVKTS--------------AALESPVKKP-IVIDEPIEVL 70
           CSL CFKKHKE PCV P  SE KT+              A +E+PV+KP +V+D+  EVL
Sbjct: 9   CSLACFKKHKELPCVNPTPSETKTADLESHVEKPSVVDNAVVEAPVEKPLVVVDKTGEVL 68

Query: 71  QKFQLEAIASSSEIRDALNDQALQELICRIDCSPNAENEFDKAMAEEAFRLFTDKILSTI 130
           Q+FQLEAIASSSEIRDALND+ALQELIC+IDCS NAENE DKAMA+EAFRLFT+KILSTI
Sbjct: 69  QQFQLEAIASSSEIRDALNDKALQELICQIDCSSNAENELDKAMADEAFRLFTNKILSTI 128

Query: 131 NP 132
           NP
Sbjct: 129 NP 130