Miyakogusa Predicted Gene

Lj0g3v0318139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318139.1 tr|G7KN01|G7KN01_MEDTR STAM-binding protein
OS=Medicago truncatula GN=MTR_6g083940 PE=4
SV=1,82.5,0.0000000003,seg,NULL,CUFF.21549.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC | chr6:3...    69   2e-12
Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC | chr8:4...    54   5e-08

>Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC |
          chr6:31340337-31333153 | 20130731
          Length = 513

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 2  TSSSSSGTINIAASAQKLDVDNRIALCFYFRIADNILRQA 41
          +SSS+SG INIA SAQKLDVDNRI+L FY+RIADNILRQA
Sbjct: 3  SSSSTSGEINIAMSAQKLDVDNRISLRFYYRIADNILRQA 42


>Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC |
          chr8:43936023-43927548 | 20130731
          Length = 511

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 6  SSGTINIAASAQKLDVDNRIALCFYFRIADNILRQA 41
          SS TI+IAA  QK+DVDNR +L  Y+RIADNIL+QA
Sbjct: 5  SSDTISIAARTQKVDVDNRFSLRIYYRIADNILKQA 40