Miyakogusa Predicted Gene

Lj0g3v0317579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317579.1 CUFF.21481.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457...   141   2e-34
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803...   140   5e-34
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804...   137   3e-33
Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773...    93   1e-19

>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
           chr1:4457792-4464676 | 20130731
          Length = 627

 Score =  141 bits (356), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/128 (63%), Positives = 90/128 (70%), Gaps = 18/128 (14%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVRQ-----------------ADEFSMK 44
           D  ADPNSPNRLVEL GT +AIA+AEKLI E+L                    ADEFSMK
Sbjct: 150 DMDADPNSPNRLVELTGTSDAIATAEKLIKEVLAEAESGGNGLVTRRMTGQGGADEFSMK 209

Query: 45  IPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQIESAK 104
           IPN+ VG IIGK G+TI SMQA +GARIQVIPLHL PGDTST ERTLKI G   QIESAK
Sbjct: 210 IPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTST-ERTLKIEGTSEQIESAK 268

Query: 105 HLVNLIMT 112
            LV+ I++
Sbjct: 269 QLVDSILS 276


>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
           chr3:48031833-48027169 | 20130731
          Length = 605

 Score =  140 bits (352), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/128 (60%), Positives = 88/128 (68%), Gaps = 18/128 (14%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVRQ-----------------ADEFSMK 44
           D  ADPNS  R+VELMGTP+A++SAEKLI E+L                     DEF M+
Sbjct: 124 DMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQ 183

Query: 45  IPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQIESAK 104
           IPN+ VG IIGK G+TI SMQA +GARIQVIPLH  PGDTST ERTLKI G P QIESAK
Sbjct: 184 IPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTST-ERTLKIDGTPDQIESAK 242

Query: 105 HLVNLIMT 112
            LVN I+T
Sbjct: 243 QLVNQILT 250



 Score = 50.8 bits (120), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 43  MKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQIES 102
           ++IPN  VG +IGK G+TI  +Q  SGA+IQV        D +++ R ++++G P  + S
Sbjct: 90  IEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVT--RDMDADPNSQTRMVELMGTPDAVSS 147

Query: 103 AKHLVNLIM 111
           A+ L+N ++
Sbjct: 148 AEKLINEVL 156


>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
           chr3:48040831-48036380 | 20130731
          Length = 605

 Score =  137 bits (346), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/128 (60%), Positives = 87/128 (67%), Gaps = 18/128 (14%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVRQ-----------------ADEFSMK 44
           D  ADPNS  R+VELMGTP+A++SAEKLI E+L                     DEF M+
Sbjct: 124 DMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASVGGTRRMVAQSGGDEFVMQ 183

Query: 45  IPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQIESAK 104
           IPN+ VG IIGK G+TI  MQA +GARIQVIPLH  PGDTST ERTLKI G P QIESAK
Sbjct: 184 IPNNKVGLIIGKGGETIKGMQASTGARIQVIPLHPPPGDTST-ERTLKIDGTPDQIESAK 242

Query: 105 HLVNLIMT 112
            LVN I+T
Sbjct: 243 QLVNQILT 250



 Score = 50.8 bits (120), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 43  MKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQIES 102
           ++IPN  VG +IGK G+TI  +Q  SGA+IQV        D +++ R ++++G P  + S
Sbjct: 90  IEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVT--RDMDADPNSQTRMVELMGTPDAVSS 147

Query: 103 AKHLVNLIM 111
           A+ L+N ++
Sbjct: 148 AEKLINEVL 156


>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
           chr5:1773973-1764791 | 20130731
          Length = 780

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 22/132 (16%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVRQ---------------------ADE 40
           DA ADP+S  R VEL+GT E+I  AEKL+  ++                        +D+
Sbjct: 223 DADADPHSSTRPVELIGTLESIDKAEKLMNAVIAEADAGGSPALVARGLSPAQAIVGSDQ 282

Query: 41  FSMKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQI 100
             +++PN  VG IIGK G+TI S+Q  +GARIQ+IP HL  GD S KERT+++ G   QI
Sbjct: 283 IQIQVPNEKVGLIIGKGGETIKSLQTKTGARIQLIPQHLPEGDDS-KERTVQVTGDKRQI 341

Query: 101 ESAKHLVNLIMT 112
           E A+ ++  +++
Sbjct: 342 EIAQEMIKEVLS 353