Miyakogusa Predicted Gene

Lj0g3v0317529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317529.1 tr|Q109L1|Q109L1_ORYSJ PsbP family protein,
expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os10g32,39.78,3e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.21478.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g115410.1 | photosystem II reaction center PsbP family pro...   167   2e-42
Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6...    95   2e-20
Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6...    94   2e-20

>Medtr1g115410.1 | photosystem II reaction center PsbP family
           protein | HC | chr1:52104806-52107080 | 20130731
          Length = 234

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 88/96 (91%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
           +GP+EEV+ +LVKH+Y+ P Q  TIYDMQE+ IDGKHYYT EYVLTS N++SASFTT+AI
Sbjct: 139 LGPMEEVITDLVKHRYTAPNQRPTIYDMQERTIDGKHYYTMEYVLTSRNYASASFTTLAI 198

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNGRYYTLIVGANERRWK+VR+QLKVVADSFRLLDI
Sbjct: 199 GNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI 234


>Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626267-7621406 | 20130731
          Length = 237

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 62/96 (64%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
            G  E+V   L+K   + P Q + I    E+ IDGK YY FE+V  +PN++  + + V+I
Sbjct: 142 FGSPEQVAATLIKKVLAPPNQKTKIIQATEREIDGKAYYQFEFVAQAPNYTRHALSAVSI 201

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNG++YTL  GANERRW +++++L  + +SF+L  +
Sbjct: 202 GNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV 237


>Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626263-7621406 | 20130731
          Length = 240

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 62/96 (64%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
            G  E+V   L+K   + P Q + I    E+ IDGK YY FE+V  +PN++  + + V+I
Sbjct: 145 FGSPEQVAATLIKKVLAPPNQKTKIIQATEREIDGKAYYQFEFVAQAPNYTRHALSAVSI 204

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNG++YTL  GANERRW +++++L  + +SF+L  +
Sbjct: 205 GNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV 240