Miyakogusa Predicted Gene

Lj0g3v0317519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317519.1 tr|B5YNR2|B5YNR2_THAPS Predicted protein
(Fragment) OS=Thalassiosira pseudonana GN=THAPS_35685 PE=4
,40.16,2e-19,CS,CS-like domain; no description,NULL; coiled-coil,NULL;
CS,CS domain; HSP20-like chaperones,HSP20-,CUFF.21477.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g463620.1 | p23-like NUD (nuclear distribution)-like prote...   240   3e-64
Medtr1g008200.1 | nuclear movement family protein | HC | chr1:78...    64   4e-11
Medtr1g008170.1 | nuclear movement family protein | HC | chr1:77...    60   5e-10
Medtr1g008195.1 | nuclear movement family protein | HC | chr1:77...    59   1e-09

>Medtr3g463620.1 | p23-like NUD (nuclear distribution)-like protein
           | HC | chr3:25506326-25504512 | 20130731
          Length = 180

 Score =  240 bits (612), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 124/158 (78%), Gaps = 28/158 (17%)

Query: 1   MAEKLAPEKRHIFLHNG----------------------------QKVFEWDQTLDEINI 32
           MAEKLAPEKRHIFLHNG                            QKVFEWDQTLDE+NI
Sbjct: 1   MAEKLAPEKRHIFLHNGTFLFHLSIFIPFHFYSIKQTNSFFFNLGQKVFEWDQTLDEVNI 60

Query: 33  YINLPPNVHSKQFYYKIQSKHIELGIKGNPPYLNHDFTSPVKTDSSFWTLEDDIMHVTLQ 92
           YINLPPNVHSK FY  IQSKHIELGIKGNPP+LNHD TSPVKTDSSFWTLEDDIMH+TL 
Sbjct: 61  YINLPPNVHSKLFYCTIQSKHIELGIKGNPPFLNHDLTSPVKTDSSFWTLEDDIMHITLN 120

Query: 93  KRDKGQTWASPILGQGQLDAYTTDIEQKRLMLQRFQEE 130
           KRDKGQTW SPILGQGQLDAY+TD+EQKRLMLQRFQEE
Sbjct: 121 KRDKGQTWPSPILGQGQLDAYSTDLEQKRLMLQRFQEE 158


>Medtr1g008200.1 | nuclear movement family protein | HC |
           chr1:783312-786579 | 20130731
          Length = 295

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYYKIQSKHIELGIKGNPPYLNHDFTSPVKTDSSFW 80
           + W QTL E+N+ + +P    S+    +I+  H+++GIKG PP ++ +    +K D  +W
Sbjct: 138 YSWTQTLQELNVNVPVPNGTKSRFVTCEIKKNHLKVGIKGQPPIIDGELYKSIKPDDCYW 197

Query: 81  TLED-DIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQKRL 122
           ++ED + + + L K D+   W   + G  +++    + E  +L
Sbjct: 198 SIEDQNTLSILLTKHDQMDWWKCLVKGDPEINTQKVEPESSKL 240


>Medtr1g008170.1 | nuclear movement family protein | HC |
           chr1:772406-769625 | 20130731
          Length = 289

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 3   EKLAPEKRHIFLHNGQKV--FEWDQTLDEINIYINLPPNVHSKQFYYKIQSKHIELGIKG 60
           EK AP +      NG  +  + W QTL E+N+ + +P    S     +I+  H+++G+KG
Sbjct: 118 EKAAPNQ-----GNGMDLEKYSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLKG 172

Query: 61  NPPYLNHDFTSPVKTDSSFWTLED-DIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQ 119
            PP ++ +    +K D  +W++ED + + + L K D+   W   + G  +++    +   
Sbjct: 173 QPPIIDRELYKSIKPDECYWSIEDQNTVSILLTKHDQMDWWKCLVKGDPEINTQKVEPAS 232

Query: 120 KRL 122
            +L
Sbjct: 233 SKL 235


>Medtr1g008195.1 | nuclear movement family protein | HC |
           chr1:779215-781348 | 20130731
          Length = 290

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYYKIQSKHIELGIKGNPPYLNHDFTSPVKTDSSFW 80
           + W QTL E+N+ + +P    S     +I+  H+++G+KG PP ++ +    +K D  +W
Sbjct: 133 YSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLKGQPPIIDGELYKFIKADECYW 192

Query: 81  TLED-DIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQKRL 122
           ++ED   + + L K D+   W   + G   ++    + E  +L
Sbjct: 193 SIEDQSTVSILLTKHDQMDWWKCLVKGDPLINTQKVEPESSKL 235