Miyakogusa Predicted Gene

Lj0g3v0317039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317039.1 Non Characterized Hit- tr|Q55EP8|Q55EP8_DICDI
Putative uncharacterized protein OS=Dictyostelium
disc,36,4e-19,YbaK,YbaK/aminoacyl-tRNA synthetase-associated domain;
YbaK/ProRS associated domain,YbaK/aminoacyl-t,CUFF.21441.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101100.1 | YbaK/proline-tRNA ligase associated domain pro...   358   2e-99

>Medtr4g101100.1 | YbaK/proline-tRNA ligase associated domain
           protein | HC | chr4:41759416-41755918 | 20130731
          Length = 234

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 194/232 (83%), Gaps = 10/232 (4%)

Query: 4   EEAMAELERVQTHLLQRISKLEHS--------LLX--XXXXXXXXXXXXXXVARLSSILR 53
           EEA+ ELERVQT LLQRISKLE          L+                 V+RLSSIL 
Sbjct: 2   EEALGELERVQTQLLQRISKLEQDSHFPPNPPLINDPHTDTDTETETETETVSRLSSILH 61

Query: 54  TNGVDDFSFKRVPSDYYDSPLEVRRDALAAASIHHLCKSIVLVNTQAPSNVVDCSDRKNS 113
           TN V+DFSFKRV SDYYD PLE RRDAL AASIHHLCKSIVLVNTQAP+NVVDCSDR NS
Sbjct: 62  TNNVNDFSFKRVASDYYDWPLESRRDALNAASIHHLCKSIVLVNTQAPANVVDCSDRNNS 121

Query: 114 KYYVVIVQYTARFNAEAVKSFLFSLNNGSIAKKKFNLRLAPEETSTELTGFGHNAVTCVG 173
           KYYVV+VQYTARFNAEAV++FL+SLNNG+IAKKKFNLRLAPEE S ELTG+GHNAVTC+G
Sbjct: 122 KYYVVVVQYTARFNAEAVRNFLYSLNNGTIAKKKFNLRLAPEEISMELTGYGHNAVTCIG 181

Query: 174 MKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTSQLIRFINPFIVNCSS 225
           MKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTS+L+RFINPFIV+CSS
Sbjct: 182 MKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTSELLRFINPFIVSCSS 233