Miyakogusa Predicted Gene
- Lj0g3v0316659.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0316659.3 Non Characterized Hit- tr|D7SS16|D7SS16_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,72.27,0,RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,Pseudouridine synthase, cat,CUFF.21412.3
(383 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g029385.1 | RNA pseudouridine synthase | HC | chr7:1045307... 667 0.0
Medtr5g004910.1 | RNA pseudouridine synthase | HC | chr5:186083-... 221 6e-58
Medtr5g004910.2 | RNA pseudouridine synthase | HC | chr5:186052-... 221 6e-58
Medtr5g459340.1 | RNA pseudourine synthase, putative | HC | chr5... 97 3e-20
Medtr1g095580.2 | pseudouridine synthase Rlu family protein | HC... 54 3e-07
Medtr1g095580.1 | pseudouridine synthase Rlu family protein | HC... 54 3e-07
Medtr1g095580.3 | pseudouridine synthase Rlu family protein | HC... 54 4e-07
Medtr3g114540.1 | RNA pseudouridine synthase, putative | HC | ch... 53 5e-07
>Medtr7g029385.1 | RNA pseudouridine synthase | HC |
chr7:10453073-10460793 | 20130731
Length = 534
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/387 (82%), Positives = 345/387 (89%), Gaps = 4/387 (1%)
Query: 1 MLNHVSRNNSWSWLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSL 60
ML +S NN SWLSS VR+YSR++PPRPV V+ VIRVSNNIARLDVPK+GPKPRQ+LSL
Sbjct: 56 MLKRMSNNNGCSWLSSLVRYYSRVRPPRPVSVDKVIRVSNNIARLDVPKDGPKPRQLLSL 115
Query: 61 PPFPGHPLPGASGQ----QRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADS 116
PPFP HPLPG + +RD VTAVNWIKYYFKG SVIESHFR+GLVQMEDLIA DS
Sbjct: 116 PPFPSHPLPGKNSTSAPGERDRVTAVNWIKYYFKGVPSSVIESHFREGLVQMEDLIAGDS 175
Query: 117 FTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQ 176
F Q E +KPMRK++PNDVMKPG+R+HVPVS+AETRIS+RYDAIPSGTLYPNADEIKYLQ
Sbjct: 176 FIQNKELLKPMRKIKPNDVMKPGSRVHVPVSIAETRISRRYDAIPSGTLYPNADEIKYLQ 235
Query: 177 RLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGI 236
RLV+YKD AIIVLNKPPKLPVKGNLPVHNSMD SYDYDEGPKLVHRLD+E+SGI
Sbjct: 236 RLVMYKDFAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGI 295
Query: 237 LLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPL 296
LL GRTKDSVSHLQWLFSN N+AKSSCKAWNDACEAT+QRYWALVIGTP EKEG+IHAPL
Sbjct: 296 LLMGRTKDSVSHLQWLFSNTNNAKSSCKAWNDACEATHQRYWALVIGTPKEKEGVIHAPL 355
Query: 297 SKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHC 356
SKVL+ND KTERVMLAHHS+IEP QEAVTEYRVLGP INGCSW+ELRPLT RKHQLRVHC
Sbjct: 356 SKVLMNDRKTERVMLAHHSSIEPHQEAVTEYRVLGPMINGCSWIELRPLTYRKHQLRVHC 415
Query: 357 AEALGTPIVGDYKYGWFVHNRWKQMPR 383
AEALGTPIVGDYKYGW VH+RWKQM R
Sbjct: 416 AEALGTPIVGDYKYGWLVHSRWKQMAR 442
>Medtr5g004910.1 | RNA pseudouridine synthase | HC |
chr5:186083-183651 | 20130731
Length = 430
Score = 221 bits (564), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 165/273 (60%), Gaps = 10/273 (3%)
Query: 117 FTQKDERMKP-------MRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNA 169
F K RM P +++ P D + G R+ +P S+ + L A
Sbjct: 70 FRLKQVRMLPRQQDDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLTA 129
Query: 170 DEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRL 229
+I +++ LVIYKD I+VLNKPP +PV+G + + S+D +YDY + P+LVHRL
Sbjct: 130 KQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRL 189
Query: 230 DKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEK 288
D++ SGIL+ GRTK S + L +F S S+ + ND + QR YWALV+G P
Sbjct: 190 DRDCSGILVMGRTKTSTALLHSIFREKTSRASNEE--NDTEKIILQRRYWALVLGCPRRS 247
Query: 289 EGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSR 348
G+++APL KV++++GK++R+ + +S + Q AVTEYRV+ +G +W+EL PLT R
Sbjct: 248 GGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGR 307
Query: 349 KHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQM 381
KHQLRVHCAE LGTPIVGDYKYG H +W Q
Sbjct: 308 KHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQF 340
>Medtr5g004910.2 | RNA pseudouridine synthase | HC |
chr5:186052-183651 | 20130731
Length = 390
Score = 221 bits (564), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 163/264 (61%), Gaps = 6/264 (2%)
Query: 119 QKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRL 178
Q D + K ++ P D + G R+ +P S+ + L A +I +++ L
Sbjct: 42 QDDNKFK---RVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQINFIRSL 98
Query: 179 VIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILL 238
VIYKD I+VLNKPP +PV+G + + S+D +YDY + P+LVHRLD++ SGIL+
Sbjct: 99 VIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRDCSGILV 158
Query: 239 FGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLS 297
GRTK S + L +F S S+ + ND + QR YWALV+G P G+++APL
Sbjct: 159 MGRTKTSTALLHSIFREKTSRASNEE--NDTEKIILQRRYWALVLGCPRRSGGVVNAPLG 216
Query: 298 KVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCA 357
KV++++GK++R+ + +S + Q AVTEYRV+ +G +W+EL PLT RKHQLRVHCA
Sbjct: 217 KVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCA 276
Query: 358 EALGTPIVGDYKYGWFVHNRWKQM 381
E LGTPIVGDYKYG H +W Q
Sbjct: 277 EVLGTPIVGDYKYGRQAHKKWGQF 300
>Medtr5g459340.1 | RNA pseudourine synthase, putative | HC |
chr5:24476846-24477166 | 20130731
Length = 82
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Query: 38 VSNNIARLDVPKEGPKPRQILSLPPFPGHPLP----GASGQQRDHVTAVNWIKYYFKGTW 93
SNNI RLDVPK+ PK RQ+ LP FP HPLP ++ ++RDHVTAVNWIKYYFKG
Sbjct: 6 FSNNITRLDVPKDAPKLRQLPLLPTFPSHPLPRKNSTSAPRERDHVTAVNWIKYYFKGAS 65
Query: 94 GSVIESHFRKGLV 106
SV +SHFR+GL+
Sbjct: 66 DSVTKSHFREGLI 78
>Medtr1g095580.2 | pseudouridine synthase Rlu family protein | HC |
chr1:43010317-43004472 | 20130731
Length = 340
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 179 VIYKDSAIIVLNKPPKLPV-KGNL----PVHNSMDXXXXXXXSYDYDEGPKLV--HRLDK 231
V+Y+D II LNKP L V G L V + + + + P V HRL +
Sbjct: 97 VLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGR 156
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
+SGILL +TK + + L F++ S N + Y ALV G N +
Sbjct: 157 GTSGILLCAKTKLARARLASYFADGTSRIEGKGHTNQELGKIAKIYRALVSGIINNDQVT 216
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI-NGCSWVELRPLTSRKH 350
I+ P+ V K V + + + A++ VL + + V+++ + R H
Sbjct: 217 INQPIGMV-----KYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPH 271
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
Q+R+H + +G P++GD Y
Sbjct: 272 QIRIHLS-FIGHPLLGDPLYA 291
>Medtr1g095580.1 | pseudouridine synthase Rlu family protein | HC |
chr1:43010317-43004442 | 20130731
Length = 370
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 179 VIYKDSAIIVLNKPPKLPV-KGNL----PVHNSMDXXXXXXXSYDYDEGPKLV--HRLDK 231
V+Y+D II LNKP L V G L V + + + + P V HRL +
Sbjct: 97 VLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGR 156
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
+SGILL +TK + + L F++ S N + Y ALV G N +
Sbjct: 157 GTSGILLCAKTKLARARLASYFADGTSRIEGKGHTNQELGKIAKIYRALVSGIINNDQVT 216
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI-NGCSWVELRPLTSRKH 350
I+ P+ V K V + + + A++ VL + + V+++ + R H
Sbjct: 217 INQPIGMV-----KYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPH 271
Query: 351 QLRVHCAEALGTPIVGDYKYG 371
Q+R+H + +G P++GD Y
Sbjct: 272 QIRIHLS-FIGHPLLGDPLYA 291
>Medtr1g095580.3 | pseudouridine synthase Rlu family protein | HC |
chr1:43010317-43005492 | 20130731
Length = 312
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 14/200 (7%)
Query: 179 VIYKDSAIIVLNKPPKLPV-KGNL----PVHNSMDXXXXXXXSYDYDEGPKLV--HRLDK 231
V+Y+D II LNKP L V G L V + + + + P V HRL +
Sbjct: 97 VLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGR 156
Query: 232 ESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGI 291
+SGILL +TK + + L F++ S N + Y ALV G N +
Sbjct: 157 GTSGILLCAKTKLARARLASYFADGTSRIEGKGHTNQELGKIAKIYRALVSGIINNDQVT 216
Query: 292 IHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI-NGCSWVELRPLTSRKH 350
I+ P+ V K V + + + A++ VL + + V+++ + R H
Sbjct: 217 INQPIGMV-----KYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPH 271
Query: 351 QLRVHCAEALGTPIVGDYKY 370
Q+R+H + +G P++GD Y
Sbjct: 272 QIRIHLS-FIGHPLLGDPLY 290
>Medtr3g114540.1 | RNA pseudouridine synthase, putative | HC |
chr3:53482122-53487173 | 20130731
Length = 456
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 223 PKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVI 282
P +VHRLDK +SG+L+ + + S L F + Y +L
Sbjct: 238 PGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFK---------------LRTIKRVYVSLTA 282
Query: 283 GTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEP--RQEAVTEYRVLGPKING-CSW 339
G P G + P+ + D M+A + + A + Y+V+ G C+
Sbjct: 283 GVPTPVSGRVEVPVGR----DPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCAL 338
Query: 340 VELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
VE + T R HQ+R H A+ LG P++GD YG
Sbjct: 339 VEWKLETGRTHQIRAH-AKYLGVPLLGDEVYG 369