Miyakogusa Predicted Gene

Lj0g3v0316659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316659.1 tr|D3BJX8|D3BJX8_POLPA Probable ribosomal large
subunit pseudouridine synthase C protein
OS=Polyspho,35.57,1e-18,PseudoU_synth_2,Pseudouridine synthase,
RsuA/RluB/C/D/E/F; RNA PSEUDOURIDYLATE SYNTHASE FAMILY
PROTE,CUFF.21412.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g029385.1 | RNA pseudouridine synthase | HC | chr7:1045307...   395   e-110
Medtr5g004910.2 | RNA pseudouridine synthase | HC | chr5:186052-...   177   7e-45
Medtr5g004910.1 | RNA pseudouridine synthase | HC | chr5:186083-...   177   1e-44

>Medtr7g029385.1 | RNA pseudouridine synthase | HC |
           chr7:10453073-10460793 | 20130731
          Length = 534

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/211 (87%), Positives = 198/211 (93%)

Query: 56  AWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAV 115
           AWNDACEAT+QRYWALVIGTP EKEG+IHAPLSKVL+ND KTERVMLAHHS+IEP QEAV
Sbjct: 324 AWNDACEATHQRYWALVIGTPKEKEGVIHAPLSKVLMNDRKTERVMLAHHSSIEPHQEAV 383

Query: 116 TEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRV 175
           TEYRVLGP INGCSW+ELRPLT RKHQLRVHCAEALGTPIVGDYKYGW VH+RWKQM RV
Sbjct: 384 TEYRVLGPMINGCSWIELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWLVHSRWKQMARV 443

Query: 176 DIEPTTGKPYRMRRPEGLEVQKGSVLSKVPLLHLHCRELALPNISKFLHVFEKSPEELHP 235
           D+EPTTGKPY++RRPEGL+VQKGSVLSKVPLLHL+CREL LPNI+KFLHV  KS EELHP
Sbjct: 444 DMEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLNCRELVLPNIAKFLHVLGKSSEELHP 503

Query: 236 SLREQPDVLRFVATMPSHMRISWNLMSSYLV 266
           SL  QPD+LRFVATMP+HMRISWNLMSSYLV
Sbjct: 504 SLSLQPDILRFVATMPNHMRISWNLMSSYLV 534


>Medtr5g004910.2 | RNA pseudouridine synthase | HC |
           chr5:186052-183651 | 20130731
          Length = 390

 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 139/234 (59%), Gaps = 4/234 (1%)

Query: 32  LGEQKIAYLIFNGYSVTLTAQNLLAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKV 90
           +G  K +  + +      T++     ND  +   QR YWALV+G P    G+++APL KV
Sbjct: 159 MGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKV 218

Query: 91  LLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEA 150
           ++++GK++R+ +  +S +   Q AVTEYRV+    +G +W+EL PLT RKHQLRVHCAE 
Sbjct: 219 VVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEV 278

Query: 151 LGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRR-PEGLEVQKGSVLSKVPLLHL 209
           LGTPIVGDYKYG   H +W Q    ++E +T +  +    P GL + KGS+  K P LHL
Sbjct: 279 LGTPIVGDYKYGRQAHKKWGQFDFSNLEDSTEEHLKEEALPFGLNLNKGSISDKHPRLHL 338

Query: 210 HCRELALPNISKFLHVFEKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSS 263
           HC+++ LPNIS+ L   +   +  +       + L   A +P +M+ SW + +S
Sbjct: 339 HCKQIVLPNISQALQNVQSVSDSSYD--LSAVESLELEADLPPYMKKSWEVTNS 390


>Medtr5g004910.1 | RNA pseudouridine synthase | HC |
           chr5:186083-183651 | 20130731
          Length = 430

 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 139/234 (59%), Gaps = 4/234 (1%)

Query: 32  LGEQKIAYLIFNGYSVTLTAQNLLAWNDACEATYQR-YWALVIGTPNEKEGIIHAPLSKV 90
           +G  K +  + +      T++     ND  +   QR YWALV+G P    G+++APL KV
Sbjct: 199 MGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKV 258

Query: 91  LLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEA 150
           ++++GK++R+ +  +S +   Q AVTEYRV+    +G +W+EL PLT RKHQLRVHCAE 
Sbjct: 259 VVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEV 318

Query: 151 LGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRR-PEGLEVQKGSVLSKVPLLHL 209
           LGTPIVGDYKYG   H +W Q    ++E +T +  +    P GL + KGS+  K P LHL
Sbjct: 319 LGTPIVGDYKYGRQAHKKWGQFDFSNLEDSTEEHLKEEALPFGLNLNKGSISDKHPRLHL 378

Query: 210 HCRELALPNISKFLHVFEKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSS 263
           HC+++ LPNIS+ L   +   +  +       + L   A +P +M+ SW + +S
Sbjct: 379 HCKQIVLPNISQALQNVQSVSDSSYD--LSAVESLELEADLPPYMKKSWEVTNS 430