Miyakogusa Predicted Gene

Lj0g3v0316469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316469.1 tr|I3SLV8|I3SLV8_LOTJA ATP synthase gamma chain
OS=Lotus japonicus PE=2 SV=1,98.47,0,seg,NULL; no description,NULL;
ATP-synt,ATPase, F1 complex, gamma subunit; ATPASEGAMMA,ATPase, F1
co,CUFF.21467.1
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g129790.1 | F0F1 ATP synthase subunit gamma | HC | chr4:54...   451   e-127
Medtr3g052270.1 | F0F1 ATP synthase subunit gamma | HC | chr3:20...    69   4e-12

>Medtr4g129790.1 | F0F1 ATP synthase subunit gamma | HC |
           chr4:54097375-54102498 | 20130731
          Length = 327

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/270 (83%), Positives = 238/270 (88%), Gaps = 7/270 (2%)

Query: 1   MAMAAALRREGKXXXXXXX------XXXXXXXXXXXDQT-LNGFRSISTQIVRNRMKSVK 53
           MAMAAALRREGK                        DQ+ + G RSISTQIVRNRMKSVK
Sbjct: 1   MAMAAALRREGKRLAPLMSSQPPINTTLRSSLISPLDQSSIGGARSISTQIVRNRMKSVK 60

Query: 54  NIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGL 113
           NIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNV++TVSSDKGL
Sbjct: 61  NIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVVITVSSDKGL 120

Query: 114 CGGINSTSVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLN 173
           CGGINSTSVKISRALSKLN+GPDKETKYVILGEKAKAQLIRDSK+DI LSLTE+QKNPLN
Sbjct: 121 CGGINSTSVKISRALSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTEIQKNPLN 180

Query: 174 YTQVSVLADDILKNVEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELD 233
           YTQVSVLADDILKNVE+DALRIVFN+F SVVQF PTVST+LSPEIVERE E+GG LGELD
Sbjct: 181 YTQVSVLADDILKNVEYDALRIVFNRFQSVVQFLPTVSTILSPEIVEREAEAGGSLGELD 240

Query: 234 SYEIEGGDSKSEILQNLSEFQFSCVMFNAV 263
           SYEIEGGD+KSEILQNL+EFQFSCVMFNAV
Sbjct: 241 SYEIEGGDTKSEILQNLTEFQFSCVMFNAV 270


>Medtr3g052270.1 | F0F1 ATP synthase subunit gamma | HC |
           chr3:20693059-20694590 | 20130731
          Length = 351

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 23/189 (12%)

Query: 45  VRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFT--------ALLGDATS 96
           +R+R+ SVK  QKIT+AMK+VAA+++R  Q    NSR   + F         +L  D   
Sbjct: 30  IRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQSLQNDDVV 89

Query: 97  V------DVKKNVIVTVSSDKGLCGGINSTSVKI--SRALSKLNAGPDKETKYVILGEKA 148
           V       VK   ++ ++ D+GLCGG N++  K   +R +   N G +     + +G+K 
Sbjct: 90  VPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGIN--CVVISVGKKG 147

Query: 149 KAQLIRDSKQDILLSLTELQKNPLNYTQVSVLADDILK---NVEFDALRIVFNKFHSVVQ 205
            +   R    ++   +  +        Q  ++ADD+       E D + +V+ KF S+V+
Sbjct: 148 SSYFNRSGFVEVDRFIDNVGFPTTKDAQ--IIADDVFSLFVTEEVDKVELVYTKFVSLVR 205

Query: 206 FYPTVSTVL 214
           F P + T+L
Sbjct: 206 FNPVIQTLL 214