Miyakogusa Predicted Gene

Lj0g3v0316399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316399.1 tr|I0Z940|I0Z940_9CHLO Methionine--tRNA ligase
OS=Coccomyxa subellipsoidea C-169 GN=metG PE=3
SV=1,48.48,1e-18,Anticodon-binding domain of a subclass of class I
aminoacyl-tRNA synthetases,Aminoacyl-tRNA syntheta,CUFF.21383.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g115295.1 | methionyl-tRNA synthetase | HC | chr1:52009887...   210   2e-55
Medtr1g018280.1 | methionyl-tRNA synthetase | HC | chr1:5180825-...    96   5e-21

>Medtr1g115295.1 | methionyl-tRNA synthetase | HC |
           chr1:52009887-52001896 | 20130731
          Length = 600

 Score =  210 bits (535), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/114 (85%), Positives = 105/114 (92%)

Query: 1   MEIGNIGNSYMDERAPWSPFKQGGAASEAAAKDIVIILETVRIIAVALFPVSPSLSWRIY 60
           MEIGN GNSYMDERAPWS FKQG  ASEAAAKD+VIILETVRIIA+AL PV+PSLSWRIY
Sbjct: 469 MEIGNAGNSYMDERAPWSLFKQGDTASEAAAKDLVIILETVRIIAIALSPVTPSLSWRIY 528

Query: 61  AQLGYSRDQFDAATWSDTRWGGLKGGQVMAQPKPVFARIENQTEVEDKRVAVGK 114
           AQLGYSRDQFDAATW DT+WGGL+GGQVMAQ +P+FARIENQ EVEDK VAVGK
Sbjct: 529 AQLGYSRDQFDAATWRDTKWGGLEGGQVMAQAQPIFARIENQAEVEDKGVAVGK 582


>Medtr1g018280.1 | methionyl-tRNA synthetase | HC |
           chr1:5180825-5174351 | 20130731
          Length = 461

 Score = 96.3 bits (238), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/114 (49%), Positives = 60/114 (52%), Gaps = 47/114 (41%)

Query: 1   MEIGNIGNSYMDERAPWSPFKQGGAASEAAAKDIVIILETVRIIAVALFPVSPSLSWRIY 60
           +EIGN GNSYMDERAPWS FKQGG ASE                                
Sbjct: 377 LEIGNAGNSYMDERAPWSLFKQGGTASE-------------------------------- 404

Query: 61  AQLGYSRDQFDAATWSDTRWGGLKGGQVMAQPKPVFARIENQTEVEDKRVAVGK 114
                      AA   DT+WGGL+GGQVMAQP+PVFARI    EVEDK VAVGK
Sbjct: 405 -----------AAAKRDTKWGGLEGGQVMAQPQPVFARI----EVEDKGVAVGK 443