Miyakogusa Predicted Gene

Lj0g3v0316219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316219.1 Non Characterized Hit- tr|F6HCT8|F6HCT8_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,61.02,2e-16,
,CUFF.21368.1
         (59 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g030890.3 | DNA-binding protein, putative | HC | chr5:1321...    81   3e-16
Medtr5g030890.1 | DNA-binding protein, putative | HC | chr5:1321...    81   3e-16

>Medtr5g030890.3 | DNA-binding protein, putative | HC |
          chr5:13218263-13212222 | 20130731
          Length = 897

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 1  MKTKQEFEWVEAQNLVLSKDLIGTAKQQLLFLAEIDRNRCLYDGPVLHRAIYRYKFCWL 59
          M+ +QE  W EAQ + +S DL+  AK+QL FLA +DRNR LYDGP L RAIYRY  CWL
Sbjct: 1  MEAEQEHAWNEAQKIGMSVDLVDVAKKQLQFLAAVDRNRHLYDGPALDRAIYRYNACWL 59


>Medtr5g030890.1 | DNA-binding protein, putative | HC |
          chr5:13218384-13212221 | 20130731
          Length = 897

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 1  MKTKQEFEWVEAQNLVLSKDLIGTAKQQLLFLAEIDRNRCLYDGPVLHRAIYRYKFCWL 59
          M+ +QE  W EAQ + +S DL+  AK+QL FLA +DRNR LYDGP L RAIYRY  CWL
Sbjct: 1  MEAEQEHAWNEAQKIGMSVDLVDVAKKQLQFLAAVDRNRHLYDGPALDRAIYRYNACWL 59