Miyakogusa Predicted Gene

Lj0g3v0316139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316139.1 Non Characterized Hit- tr|B9FL37|B9FL37_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.91,0.0000000005,seg,NULL; CSTF_C,Transcription termination
and cleavage factor C-terminal domain; CLEAVAGE
STIMULATI,NODE_9000_length_1337_cov_101.720268.path2.1
         (345 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g104260.1 | hydroxyproline-rich glycoprotein-like protein ...   329   2e-90

>Medtr8g104260.1 | hydroxyproline-rich glycoprotein-like protein |
           HC | chr8:43905814-43900142 | 20130731
          Length = 395

 Score =  329 bits (844), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/347 (58%), Positives = 213/347 (61%), Gaps = 3/347 (0%)

Query: 1   MLTKALFQAQIMLGXXXXXXXXXXXXXXX-XXXXXSVQSAXXXXXXXXXXXXGQGGAQDQ 59
           MLTKALFQAQIMLG                     SVQ               QGG QDQ
Sbjct: 50  MLTKALFQAQIMLGMVQSQQAVPKVQPIAPQNNQQSVQPTQRPSVQPAPILPAQGGIQDQ 109

Query: 60  AGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXX 119
           AGVSQTQIP RKHQNQPSVPVSYAA PA SHQS P A HSLQMPQQPKGH          
Sbjct: 110 AGVSQTQIPPRKHQNQPSVPVSYAAVPATSHQSQPTAAHSLQMPQQPKGHLTPQVAPASV 169

Query: 120 XXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSA 179
                  +I              TQM TASSQ  QPLQ PGF HM             S 
Sbjct: 170 PQSSQLPHIPPPSVHSSSQPLHPTQMPTASSQAHQPLQTPGFSHMPLQPPLPPQPRPPSV 229

Query: 180 SSFHPQYPPQMGSNLGFQHAG-ASHNLQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXX 238
            +FHPQYPP +G+NLGFQHAG ASHNL   MFH GAKPP SVGS F  G           
Sbjct: 230 QTFHPQYPPPIGANLGFQHAGGASHNLPPPMFHAGAKPP-SVGSTFPPGQALLPSQQSSQ 288

Query: 239 XXYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMGAANQ 298
             Y VGN+PFG DF +Q GNAMQ++R S    G SENLAQ SGP GP S+VSGQ+GAANQ
Sbjct: 289 SSYQVGNIPFGSDFSSQAGNAMQIERGSSWMPGPSENLAQHSGPQGPSSMVSGQIGAANQ 348

Query: 299 PLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           P RPP LTPDMEKALLQQVMSLTPEQIN LPPEQRNQVLQLQ MLR+
Sbjct: 349 PPRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQLMLRK 395