Miyakogusa Predicted Gene

Lj0g3v0315759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315759.1 Non Characterized Hit- tr|B7PZE0|B7PZE0_IXOSC
Exosome component, putative OS=Ixodes scapularis
GN=Is,35.4,5e-16,HRDC,Helicase/RNase D C-terminal, HRDC domain;
HRDC-like,HRDC-like; POLYMYOSITIS/SCLERODERMA AUTOANT,CUFF.21330.1
         (463 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC | chr6:9...   614   e-176
Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC | chr6:9...   332   4e-91
Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-3352415...   269   5e-72
Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-3352415...   220   2e-57
Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-3352172...   103   5e-22
Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC | chr4:1...    57   4e-08
Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC | chr4:1...    57   4e-08

>Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC |
           chr6:9716121-9707250 | 20130731
          Length = 882

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 333/470 (70%), Positives = 374/470 (79%), Gaps = 17/470 (3%)

Query: 1   MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
           MRI L SLPK  +SSD PLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL
Sbjct: 423 MRINLCSLPKAPESSDTPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 482

Query: 61  AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLVKSKHPYVEHNLD 120
           AIVSGLCEWRDIVARAEDESTGYVLPNK+VLEIAKQMP+  +KLRRLVK+KHPY+EHNLD
Sbjct: 483 AIVSGLCEWRDIVARAEDESTGYVLPNKTVLEIAKQMPVTTNKLRRLVKTKHPYLEHNLD 542

Query: 121 TVVNIIRHSIQKAAAFEVAAQELKGVHAATASDVVPVFNGTESTLHKQNSKESFQHQDTD 180
           +VV +IRHSIQ AAAFE AAQ+LK  +A T SD VPV    +     QN KESFQHQDTD
Sbjct: 543 SVVTVIRHSIQNAAAFEAAAQQLKEGNATTGSDAVPV-TTEDPAPQTQNPKESFQHQDTD 601

Query: 181 IQIKLKSNSLTSELPRDSLTVSEQNKDANTGALSTLEGNGATVQVLKKPAGAFGALLGNS 240
           +QIKLK N++TSELPR+SLT+ EQ +DAN GALSTL+GNGATVQVLKKP GAFGALLGNS
Sbjct: 602 VQIKLKPNNVTSELPRESLTIPEQTRDANVGALSTLKGNGATVQVLKKPGGAFGALLGNS 661

Query: 241 ASKRKHDPD-KGMEEIKLEQIRSSVSLPFHSFLGSSEKSKPIVEAPSLASEMSDLHKPAS 299
           ASKRK   D KG EEIKLEQIRSSV+LPFHSF G SE SKP+VE PS+A    D  KP +
Sbjct: 662 ASKRKLGLDKKGKEEIKLEQIRSSVTLPFHSFSGGSETSKPVVETPSVA----DQQKPVT 717

Query: 300 DPVSTSTLDEIILLDSDIAA-EDLEQ-SNLEDPIENRENRSTVSTSGTEDEDVPMSLSEL 357
           DP STS LDEII+LD+D    ED+EQ +NLE+P E  E   + STS   DED P SLSEL
Sbjct: 718 DPASTSALDEIIMLDTDTGVEEDVEQNNNLENPTEQTEKNPSASTS---DEDEPKSLSEL 774

Query: 358 SSNFQKCFQSNNHNTKTRQPQKTD-PSGLFQLKPFDYKAAM---KFGENTARASSRSGDG 413
           S+NF+KCFQSN  N + R+P+KT+  SGL QL P+DY+AAM   KFGE     SS++ DG
Sbjct: 775 SANFKKCFQSNKQNNRIRKPKKTEQASGLLQLTPYDYEAAMNHVKFGEKKKNPSSQNCDG 834

Query: 414 HIEIEEDSGGKKKRSNRGQGQSTDDLNKPLPQGRRRQAFPASGNRSATFR 463
             E +ED+ GKKKRS  G GQ + DL K   QGRRR AFPASGNRSATFR
Sbjct: 835 RAE-KEDASGKKKRSTIGDGQPS-DLPKQFQQGRRRAAFPASGNRSATFR 882


>Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC |
           chr6:9716121-9707250 | 20130731
          Length = 651

 Score =  332 bits (851), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 188/217 (86%), Gaps = 1/217 (0%)

Query: 1   MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
           MRI L SLPK  +SSD PLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL
Sbjct: 423 MRINLCSLPKAPESSDTPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 482

Query: 61  AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLVKSKHPYVEHNLD 120
           AIVSGLCEWRDIVARAEDESTGYVLPNK+VLEIAKQMP+  +KLRRLVK+KHPY+EHNLD
Sbjct: 483 AIVSGLCEWRDIVARAEDESTGYVLPNKTVLEIAKQMPVTTNKLRRLVKTKHPYLEHNLD 542

Query: 121 TVVNIIRHSIQKAAAFEVAAQELKGVHAATASDVVPVFNGTESTLHKQNSKESFQHQDTD 180
           +VV +IRHSIQ AAAFE AAQ+LK  +A T SD VPV    +     QN KESFQHQDTD
Sbjct: 543 SVVTVIRHSIQNAAAFEAAAQQLKEGNATTGSDAVPV-TTEDPAPQTQNPKESFQHQDTD 601

Query: 181 IQIKLKSNSLTSELPRDSLTVSEQNKDANTGALSTLE 217
           +QIKLK N++TSELPR+SLT+ EQ +DAN GALSTL+
Sbjct: 602 VQIKLKPNNVTSELPRESLTIPEQTRDANVGALSTLK 638


>Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-33524154 |
           20130731
          Length = 693

 Score =  269 bits (687), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 174/346 (50%), Positives = 217/346 (62%), Gaps = 44/346 (12%)

Query: 1   MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
           MRIKLF L KE +S D PL+EVY+RSY+VCMQLYEK+LLTENS+L+I GL+GAGFN QQL
Sbjct: 373 MRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQL 432

Query: 61  AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLV--KSKHPYVEHN 118
           A+VSGL EWRD++ARAEDESTGY+LPNK +L IAK MP+  S LRRL+  +S+ PYVE N
Sbjct: 433 AVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIAERSRLPYVERN 492

Query: 119 LDTVVNIIRHSIQKAAAF---------------EVAAQELKGVHAATASDVVPVFNGTES 163
            D VVNI+RHS+ KAAAF               E AA  LK  HAA+ S+V  V +GTE+
Sbjct: 493 HDIVVNIVRHSMGKAAAFEEAALRLKEEHAAFVEAAALRLKEEHAASVSNVASVEDGTEA 552

Query: 164 TLHKQNSKESFQHQDTDIQIKLKSNSLTSELPRDSLTVSEQNKDANTGALSTLEGNGATV 223
                 S +     +  I I+   N+    +   SL  S+ N        S ++ NG  V
Sbjct: 553 PQSPSLSLKDECAANGSIGIE---NATCVNISEKSLFSSDPNS-------SAVKENGTNV 602

Query: 224 QVLKKPAGAFGA-LLGNSASKRKHDPD-KGMEEIKLEQIRSSVSLPFHSFLGSSEKSKPI 281
           Q LK P  A  A LLGNS S+    PD KG ++IK+EQ  SS++LP HSFLG++EKSK  
Sbjct: 603 QALKMPTVACDATLLGNSTSEGNGYPDKKGKKKIKVEQNVSSINLPSHSFLGNNEKSKLA 662

Query: 282 VEAPSLASEMSDLHKPASDPVSTSTLDEIILLDSDIAAEDLEQSNL 327
           V   S               VSTSTLD  + +D D  +ED+ QSNL
Sbjct: 663 VSVAS---------------VSTSTLDANMTVDLDSDSEDMMQSNL 693


>Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-33524154 |
           20130731
          Length = 598

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/180 (62%), Positives = 135/180 (75%), Gaps = 17/180 (9%)

Query: 1   MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
           MRIKLF L KE +S D PL+EVY+RSY+VCMQLYEK+LLTENS+L+I GL+GAGFN QQL
Sbjct: 373 MRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQL 432

Query: 61  AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLV--KSKHPYVEHN 118
           A+VSGL EWRD++ARAEDESTGY+LPNK +L IAK MP+  S LRRL+  +S+ PYVE N
Sbjct: 433 AVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIAERSRLPYVERN 492

Query: 119 LDTVVNIIRHSIQKAAAF---------------EVAAQELKGVHAATASDVVPVFNGTES 163
            D VVNI+RHS+ KAAAF               E AA  LK  HAA+ S+V  V +GTE+
Sbjct: 493 HDIVVNIVRHSMGKAAAFEEAALRLKEEHAAFVEAAALRLKEEHAASVSNVASVEDGTEA 552


>Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-33521721 |
           20130731
          Length = 438

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 57/64 (89%)

Query: 1   MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
           MRIKLF L KE +S D PL+EVY+RSY+VCMQLYEK+LLTENS+L+I GL+GAGFN QQL
Sbjct: 373 MRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQL 432

Query: 61  AIVS 64
           A+VS
Sbjct: 433 AVVS 436


>Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC |
           chr4:17080440-17072522 | 20130731
          Length = 930

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 19  LVEVYKRSYDVCMQLYEKELLT---ENSYLHIYGLQGAGF-------NAQQLAIVSGLCE 68
           ++E  +RS  +C+QL+ KE+     E++ L +Y    +           Q L+IV  LC 
Sbjct: 298 VLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQLCT 357

Query: 69  WRDIVARAEDESTGYVLPNKSVLEIAKQMP 98
           WRD++AR  DES  YVL +++++ +A ++P
Sbjct: 358 WRDLMARIHDESLKYVLSDQAIVALASRLP 387


>Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC |
           chr4:17080472-17072108 | 20130731
          Length = 908

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 19  LVEVYKRSYDVCMQLYEKELLT---ENSYLHIYGLQGAGF-------NAQQLAIVSGLCE 68
           ++E  +RS  +C+QL+ KE+     E++ L +Y    +           Q L+IV  LC 
Sbjct: 298 VLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQLCT 357

Query: 69  WRDIVARAEDESTGYVLPNKSVLEIAKQMP 98
           WRD++AR  DES  YVL +++++ +A ++P
Sbjct: 358 WRDLMARIHDESLKYVLSDQAIVALASRLP 387