Miyakogusa Predicted Gene

Lj0g3v0315359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315359.1 tr|B9HHZ5|B9HHZ5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564123 PE=4
SV=1,56.76,0.000000000002,coiled-coil,NULL; seg,NULL; GYF domain,GYF;
DUF4339,Domain of unknown function DUF4339,CUFF.21302.1
         (233 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g078210.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   211   5e-55

>Medtr1g078210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:35008732-35001604 | 20130731
          Length = 506

 Score =  211 bits (537), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/246 (53%), Positives = 157/246 (63%), Gaps = 21/246 (8%)

Query: 1   MASENGHGSQ------PQISGDNVTELGWYVLGQDQQQLGPYAFSELREHFSNGYIFENT 54
           M SENG+ +       PQ +G+NV E+GWYVLG++QQQLGPY FSE++EHF NGY+ ENT
Sbjct: 1   MNSENGYENHNQPQPQPQPTGENVAEVGWYVLGENQQQLGPYIFSEVQEHFLNGYLSENT 60

Query: 55  LVWSEGRSEWQPLSSISSLWAEINQGGPD-SSTAV--SAHEVDEFERWQREIQEAEAQVE 111
           L+WSEGR+EWQPLSSIS LW EI++  PD SSTAV   A +VDEFE+WQ+EI+EAEAQVE
Sbjct: 61  LLWSEGRTEWQPLSSISELWDEISRREPDSSSTAVYAEAEDVDEFEKWQKEIKEAEAQVE 120

Query: 112 GSEFGSISGNVGDSVAGEDFERPSXXXXXXXXXXXXXXXKYKWDRNFRVW--VPQ-EHTS 168
            SEFG           GED ERPS                YKWD++ R +  VPQ E TS
Sbjct: 121 ASEFGG-------GGVGEDVERPSTPPDGEEEFTDDDGT-YKWDKSLRAYKQVPQDEATS 172

Query: 169 GSTEPYGVEEMTFLKEDEVFPLA-NSDAPXXXXXXXXXXXXXXXXXXXANEANNPNTVAD 227
           GS  PYGVEEMTFLKE+EVFP+  +SDA                      EA N + VA 
Sbjct: 173 GSALPYGVEEMTFLKEEEVFPIVTDSDASKIVEDSSKSSVSATSIKEETTEAKNTSVVAV 232

Query: 228 GKRKLS 233
           GKRK S
Sbjct: 233 GKRKHS 238