Miyakogusa Predicted Gene

Lj0g3v0315349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315349.1 Non Characterized Hit- tr|F2UK21|F2UK21_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,36.91,3e-19,seg,NULL; RRM_5,NULL; RNA-binding domain, RBD,NULL;
RRM,RNA recognition motif domain; RNA recognitio,CUFF.21301.1
         (162 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g078210.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   244   2e-65

>Medtr1g078210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:35008732-35001604 | 20130731
          Length = 506

 Score =  244 bits (624), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/164 (72%), Positives = 131/164 (79%), Gaps = 2/164 (1%)

Query: 1   MSVTPAKFEQKGDX--XXXXXXXXXXXXXXXXXXXXMLGWGGRDDAKLSIPATVILRYMF 58
           MSV+ AKF+QKG+                       MLGWGGRDD+K+ IP TV+LRYMF
Sbjct: 343 MSVSLAKFQQKGEKFVSKQVDKDNRRKKKTKKLEDKMLGWGGRDDSKVLIPTTVVLRYMF 402

Query: 59  SPAEMRADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVRFKDRKDAQTCIDTM 118
           SPAEMRADENL  ELEEDVKEECTKLGPID+VKVC+NHPQGVVLV+FKDRK AQ CI+ M
Sbjct: 403 SPAEMRADENLHSELEEDVKEECTKLGPIDAVKVCDNHPQGVVLVKFKDRKGAQACIELM 462

Query: 119 NGRWFGGRQIHASEDDGLVNHALVRDLDEDAKRLEQFGAELEGE 162
           NGRWFGGRQIHASEDDGL+NHA VRDL+EDAKRLEQFG ELEGE
Sbjct: 463 NGRWFGGRQIHASEDDGLINHATVRDLEEDAKRLEQFGEELEGE 506