Miyakogusa Predicted Gene

Lj0g3v0314959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314959.1 tr|Q4ABN9|Q4ABN9_BRARP 80A08_28 OS=Brassica rapa
subsp. pekinensis GN=80A08_28 PE=4 SV=1,45.24,3e-19, ,CUFF.22265.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g090010.1 | transmembrane protein, putative | HC | chr8:37...   147   3e-36
Medtr3g087020.1 | epidermal patterning factor-like protein | HC ...   124   2e-29
Medtr3g110550.1 | epidermal patterning factor-like protein, puta...    71   2e-13
Medtr4g097720.1 | epidermal patterning factor-like protein | HC ...    67   3e-12
Medtr5g014840.1 | epidermal patterning factor-like protein | HC ...    60   3e-10
Medtr4g114660.1 | epidermal patterning factor-like protein | HC ...    59   9e-10
Medtr8g017850.1 | epidermal patterning factor-like protein | HC ...    59   1e-09
Medtr2g099810.1 | epidermal patterning factor-like protein | HC ...    58   2e-09
Medtr2g039920.1 | hypothetical protein | LC | chr2:17500449-1750...    57   6e-09
Medtr2g103780.1 | epidermal patterning factor-like protein | LC ...    53   6e-08
Medtr4g010300.1 | epidermal patterning factor-like protein, puta...    49   2e-06

>Medtr8g090010.1 | transmembrane protein, putative | HC |
           chr8:37665928-37666504 | 20130731
          Length = 123

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 96/128 (75%), Gaps = 9/128 (7%)

Query: 1   MASLNSHQCFTTLFLIILLNHLPYLVSTS--NQPKPAISPRELLFEEKNRLGSMPPSCHN 58
           MASLNS+   TT  LII+L     L   S  N+ +P+I PRELLFEEKNRLGSMPPSCH+
Sbjct: 1   MASLNSYHYSTTTLLIIVLLLHHLLPLVSCFNKLQPSIPPRELLFEEKNRLGSMPPSCHS 60

Query: 59  KCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQ--GTRYSNYKPLGWKCH 116
           KCNECHPCMAVQVP+LP  +SV      SK ASM+ W  PSLQ   +RYSNYKPLGWKCH
Sbjct: 61  KCNECHPCMAVQVPSLPRQDSVP-----SKVASMKKWLSPSLQLGNSRYSNYKPLGWKCH 115

Query: 117 CGDHFFNP 124
           CGDHFFNP
Sbjct: 116 CGDHFFNP 123


>Medtr3g087020.1 | epidermal patterning factor-like protein | HC |
           chr3:39454024-39454681 | 20130731
          Length = 121

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 83/126 (65%), Gaps = 7/126 (5%)

Query: 1   MASLNSHQCFTTLFLIILLNHLPYLVSTSNQPKPAISPRELLFEEKNRLGSMPPSCHNKC 60
           MASLNS+     + +I + + L Y  S   QP  AI PR LLFEEKNRLGS PP+CHNKC
Sbjct: 1   MASLNSYHLILLMVIIFIPHLLLYPASCFYQPHSAIPPRGLLFEEKNRLGSAPPTCHNKC 60

Query: 61  NECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTR--YSNYKPLGWKCHCG 118
           N+CHPCMAVQV   P+H  V  P   + T+S E   +  LQG    YSNYKPL WKCHCG
Sbjct: 61  NQCHPCMAVQV---PSHEHVQ-PGHTASTSSTEGVNF-FLQGNNNGYSNYKPLSWKCHCG 115

Query: 119 DHFFNP 124
            +FFNP
Sbjct: 116 GNFFNP 121


>Medtr3g110550.1 | epidermal patterning factor-like protein,
           putative | HC | chr3:51679203-51679793 | 20130731
          Length = 130

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 8/83 (9%)

Query: 42  LFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQ 101
           +  EK ++GS PP C  +C  C  C AVQVP +P+   ++        +  ++  Y S +
Sbjct: 56  MLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIH-------RSHYDSAAYSS-R 107

Query: 102 GTRYSNYKPLGWKCHCGDHFFNP 124
           G   SNYKP+ WKC CGD+FFNP
Sbjct: 108 GDGLSNYKPISWKCKCGDYFFNP 130


>Medtr4g097720.1 | epidermal patterning factor-like protein | HC |
           chr4:40341547-40342092 | 20130731
          Length = 121

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 9   CFTTLFLIILLNHLPYLVSTSNQPKPAISPRELLFEEK----NRLGSMPPSCHNKCNECH 64
           C +  FL+I    L  LV+   +       ++ + EEK     ++GS PP C  +C  C 
Sbjct: 9   CISLFFLVISSWILQGLVTEGRKIHKQSGFQQTVSEEKMILRAQIGSRPPKCDRRCRSCG 68

Query: 65  PCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
            C A+QVPT       NP     K  S +       +G   SNYKP+ WKC CG+  FNP
Sbjct: 69  HCEAIQVPT-------NPQVQNVKINSSKFSSIAYSRGNYNSNYKPMSWKCKCGNLIFNP 121


>Medtr5g014840.1 | epidermal patterning factor-like protein | HC |
           chr5:5042120-5040915 | 20130731
          Length = 131

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 24/126 (19%)

Query: 14  FLIILLNHLPYLVSTSNQPKPAISPRELLFEE-------------KNRLGSMPPSCHNKC 60
           F  I ++ L  +VS+  Q       R+ L +              + ++GS PP C  +C
Sbjct: 15  FSFITISLLFLIVSSLTQKGLVTEGRKTLNQNGFHQTLGDNKVMVRKQIGSRPPKCDTRC 74

Query: 61  NECHPCMAVQVPTLPTH--NSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCG 118
             C  C A+QVP  P      +NP       +++    Y   Q    SNYKP+ WKC CG
Sbjct: 75  RFCGHCEAIQVPENPRAMTGKINP-------STLSTVAYARRQDN--SNYKPMSWKCKCG 125

Query: 119 DHFFNP 124
           D  FNP
Sbjct: 126 DIIFNP 131


>Medtr4g114660.1 | epidermal patterning factor-like protein | HC |
           chr4:47180359-47180843 | 20130731
          Length = 114

 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 11  TTLFLIILLNHLPYLVSTSNQPKPAISPRELLFEEKNRLGSMPPSCHNKCNECHPCMAVQ 70
            TL LII L      +  S   K     + L+ ++K+ LGS PP C NKC  C PCMA  
Sbjct: 15  VTLILIIFLTLFASNLEGSQNLKKYHRSKGLINQKKSVLGSRPPRCVNKCLNCRPCMATL 74

Query: 71  VPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
           V  +  H+ V        TA  +              Y  + WKC CG+ FF P
Sbjct: 75  V--ISPHHKVGQIHKAKITAEKDE------------GYYLMSWKCKCGNKFFQP 114


>Medtr8g017850.1 | epidermal patterning factor-like protein | HC |
           chr8:6025784-6026335 | 20130731
          Length = 129

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 23/81 (28%)

Query: 44  EEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGT 103
            E +++GS PPSC +KC +C PC A QVP+  +H                        G 
Sbjct: 72  REVSKIGSSPPSCEHKCYDCFPCEATQVPSRTSH-----------------------LGI 108

Query: 104 RYSNYKPLGWKCHCGDHFFNP 124
            Y+NY+P  WKC CG  F++P
Sbjct: 109 MYANYEPESWKCKCGPSFYSP 129


>Medtr2g099810.1 | epidermal patterning factor-like protein | HC |
           chr2:42823251-42824486 | 20130731
          Length = 128

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 26/93 (27%)

Query: 39  RELLFEEK-------NRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTAS 91
           +E+++++        N++GS PPSC +KC  C+PC A+QVP+  +          SK   
Sbjct: 55  KEVVYDDDRDIGISSNKIGSSPPSCEHKCYGCNPCEAIQVPSTES----------SKRNH 104

Query: 92  MENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
           +         G +Y+NY+P  WKC CG  F++P
Sbjct: 105 L---------GLQYANYEPESWKCKCGPSFYSP 128


>Medtr2g039920.1 | hypothetical protein | LC |
           chr2:17500449-17501562 | 20130731
          Length = 127

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 23/98 (23%)

Query: 27  STSNQPKPAISPRELLFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDL 86
            ++   K  +   E L    +R+GS PP C +KC  C PC   Q PT             
Sbjct: 53  DSTQGEKVMMEYEEALRGVGSRIGSTPPRCEHKCGGCIPCNPTQKPT------------- 99

Query: 87  SKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
                        L G +Y+NY+P GWKC CG  +FNP
Sbjct: 100 ----------NKHLIGVQYANYEPEGWKCMCGTSYFNP 127


>Medtr2g103780.1 | epidermal patterning factor-like protein | LC |
           chr2:44681585-44682217 | 20130731
          Length = 113

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 42  LFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQ 101
           L E K  +GS PP C NKC +C PCMA  V     H            +S E+       
Sbjct: 42  LEERKVAIGSKPPVCVNKCMKCRPCMATVVVNDHDHQRKRKMKGFKLESSQED------- 94

Query: 102 GTRYSNYKPLGWKCHCGDHFFNP 124
                +Y  L WKC CG+  F P
Sbjct: 95  ----DSYYLLSWKCRCGNKLFQP 113


>Medtr4g010300.1 | epidermal patterning factor-like protein,
           putative | HC | chr4:2329987-2331019 | 20130731
          Length = 111

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 10  FTTLFLIILLNHLPYLVSTSNQPKPAISPRELLFEEKNRLGSMPPSCHNKCNECHPCMAV 69
             T+  ++ +     L S S      +   + L + K  +GS PP+C NKC  C PC+A 
Sbjct: 15  LATIITVLFIFFFCMLFSKSGGS-LVLERNDSLQDRKMVIGSKPPACLNKCMNCRPCIAT 73

Query: 70  QVPTLPTHNSVNPPPDLSKTASMENWPYPSL-QGTRYSNYKPLGWKCHCGDHFFNP 124
            V                   S +   Y  L +G     Y  L WKC CG+  F P
Sbjct: 74  LV------------------VSQKRKSYKVLSRGDDNDTYYLLAWKCRCGNKVFQP 111