Miyakogusa Predicted Gene

Lj0g3v0314899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314899.1 tr|E4V2B9|E4V2B9_ARTGP Nucleolar complex protein
2 OS=Arthroderma gypseum (strain ATCC MYA-4604 / CB,29.44,4e-19,RAD4
PROTEIN RELATED,NULL; NUCLEOLAR COMPLEX 2 AND
RAD4-RELATED,Uncharacterised protein family UPF01,CUFF.21274.1
         (225 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g033410.1 | Noc2p family protein | HC | chr6:10766619-1075...   352   2e-97
Medtr1g110560.1 | nucleolar complex-like protein | HC | chr1:498...   148   3e-36

>Medtr6g033410.1 | Noc2p family protein | HC |
           chr6:10766619-10759405 | 20130731
          Length = 719

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 188/229 (82%), Gaps = 4/229 (1%)

Query: 1   MSVQIINGVALLFPGPRYLPLRLRCIQWLNHLACSSGVFIPVTSLVLDVLEYKITKDGGK 60
           M  QI NGVALLFPGPRYLPLR+RCIQWLN LA SSG+FIPVTS VLD LEY ITKDGGK
Sbjct: 468 MIAQITNGVALLFPGPRYLPLRVRCIQWLNRLAGSSGIFIPVTSFVLDFLEYNITKDGGK 527

Query: 61  PGK--VFEPLSSVKLPKHWLKSQDFQEECVLSAIELLSEHFAQWSYHLSFPELAIAPLIH 118
           PGK   FEPLS+VKLPKHWLKS++FQEECV S IELLSEHF+QWSYH+SFPELA APL++
Sbjct: 528 PGKDFEFEPLSTVKLPKHWLKSREFQEECVSSTIELLSEHFSQWSYHVSFPELATAPLVY 587

Query: 119 LKKLFERTSIESLKRVIKRFIDQVELNVDYVQKKRDEVPFSPKDQQSVESFLQAEKRNGN 178
           LKK+ E+TS ES KRVIKRFIDQVELNVD VQKKRD+VPFSPKDQQSVE+FLQAEKR+GN
Sbjct: 588 LKKIVEKTSNESFKRVIKRFIDQVELNVDLVQKKRDDVPFSPKDQQSVETFLQAEKRSGN 647

Query: 179 TPFTQYYKSIMSKAASRKVIS--NXXXXXXXXXXMQHPNGTVDVITSDS 225
             F QYYKSIM KAASRK IS              QHPNG VD   +DS
Sbjct: 648 NSFMQYYKSIMRKAASRKAISKRKKSPGKGKKKRKQHPNGVVDGNPTDS 696


>Medtr1g110560.1 | nucleolar complex-like protein | HC |
           chr1:49889345-49883337 | 20130731
          Length = 731

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 3   VQIINGVALLFPGPRYLPLRLRCIQWLNHLACSSGVFIPVTSLVLDVLEYKITKD--GGK 60
            QII GVA L P  RY PLRLRCI+ LN +A S+  F+PV+ L+LD+LE K       G 
Sbjct: 402 TQIIFGVARLVPTARYFPLRLRCIRMLNQIAASTQSFVPVSMLLLDMLEMKELNRPPTGG 461

Query: 61  PGKVFEPLSSVKLPKHWLKSQDFQEECVLSAIELLSEHFAQWSYHLSFPELAIAPLIHLK 120
            GK  +  S +K+ K  LK++ FQE CV S +E L+EH A WSY + F EL+  P++ L+
Sbjct: 462 VGKAVDLRSILKISKPTLKTRAFQEACVFSVVEELAEHLALWSYSVGFMELSFIPIVRLR 521

Query: 121 KLFERTSIESLKRVIKRFIDQVELNVDYVQKKRDEVPFSPKDQQSVESFLQAEKRNGNTP 180
              + T +E  +R +++ I ++E NV +V ++R  + F P D  +  SFL+ EK++ ++ 
Sbjct: 522 NFCKLTKVERFRREMRQLIREIEANVQFVNERRMSISFLPND-PAASSFLEDEKKSASSA 580

Query: 181 FTQYYKSIMSKAASR 195
            ++Y  ++  +A  +
Sbjct: 581 LSKYVITLRQRAKQK 595