Miyakogusa Predicted Gene

Lj0g3v0314699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314699.1 Non Characterized Hit- tr|B8AGG1|B8AGG1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,69.05,2e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; seg,NULL,CUFF.21260.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032440.2 | zinc finger (C3HC4-type RING finger) family pr...   150   9e-37
Medtr1g032440.1 | zinc finger (C3HC4-type RING finger) family pr...   149   1e-36
Medtr8g105330.1 | zinc finger, C3HC4 type (RING finger) protein ...   131   3e-31
Medtr5g010720.1 | zinc finger, C3HC4 type (RING finger) protein ...    92   4e-19
Medtr4g102870.1 | zinc finger, C3HC4 type (RING finger) protein ...    89   3e-18
Medtr7g088500.1 | E3 ubiquitin protein ligase RIE1-like protein ...    86   2e-17
Medtr7g076010.1 | RING zinc finger protein, putative | HC | chr7...    69   2e-12

>Medtr1g032440.2 | zinc finger (C3HC4-type RING finger) family
           protein | HC | chr1:11531767-11536305 | 20130731
          Length = 317

 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 1   MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
           MSWNMAFVVVSA MLA TV E+PN PIR+WIVGYALQC +HVVLVW EY           
Sbjct: 73  MSWNMAFVVVSAVMLAFTVDERPNMPIRVWIVGYALQCFVHVVLVWIEYHRRNRRDSRQR 132

Query: 61  XXLVEXX-XXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLM 119
               +                       FTKRCE+INTGVSF+WWMVGFYWVVSG D+L+
Sbjct: 133 QRESDAEFSSDGNDSDDSDGDVNSTQSRFTKRCESINTGVSFLWWMVGFYWVVSGDDILL 192

Query: 120 QDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
           QDAPRLYWL              CVV                    YAVAGQ
Sbjct: 193 QDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 244


>Medtr1g032440.1 | zinc finger (C3HC4-type RING finger) family
           protein | HC | chr1:11531767-11536322 | 20130731
          Length = 350

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 1   MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
           MSWNMAFVVVSA MLA TV E+PN PIR+WIVGYALQC +HVVLVW EY           
Sbjct: 73  MSWNMAFVVVSAVMLAFTVDERPNMPIRVWIVGYALQCFVHVVLVWIEYHRRNRRDSRQR 132

Query: 61  XXLVEXX-XXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLM 119
               +                       FTKRCE+INTGVSF+WWMVGFYWVVSG D+L+
Sbjct: 133 QRESDAEFSSDGNDSDDSDGDVNSTQSRFTKRCESINTGVSFLWWMVGFYWVVSGDDILL 192

Query: 120 QDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
           QDAPRLYWL              CVV                    YAVAGQ
Sbjct: 193 QDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 244


>Medtr8g105330.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr8:44439492-44443627 | 20130731
          Length = 336

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 84/171 (49%)

Query: 1   MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
           ++WN  FVVV+A ML C+V E PNTPIRLWI GYA+QCL+HV LV  EY           
Sbjct: 62  VTWNTVFVVVAAVMLGCSVDENPNTPIRLWIFGYAVQCLVHVALVLLEYRRRNVIGGGRE 121

Query: 61  XXLVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQ 120
                                      F KRC ++NT +S +WWMVGFYWVV+GGD+L+Q
Sbjct: 122 RDEESLDDVNDSEEDDDVEFLNSSSSGFAKRCSSLNTMLSLLWWMVGFYWVVNGGDILIQ 181

Query: 121 DAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
           DAPRLYWL              CV                     YAVAGQ
Sbjct: 182 DAPRLYWLAVVFLAFDVFFAVFCVALACLIGIALCCCLPCIIGILYAVAGQ 232


>Medtr5g010720.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:2925922-2918994 | 20130731
          Length = 387

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 63/141 (44%), Gaps = 15/141 (10%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
           WN AFV+V+   L  +  E P  P+RLWI GY LQC+LH+V V FEY             
Sbjct: 92  WNFAFVIVAGTALFLSRNEAPEMPLRLWIAGYVLQCVLHMVCVCFEYRRRRRFQRSSSSN 151

Query: 63  LVE---------------XXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVG 107
            V                                        K  E+ NT  SFIWW++G
Sbjct: 152 AVAGSDRIGSGNFSSREGSRSAVSGSSYVSLAQFDEESTSVAKHLESANTMFSFIWWIIG 211

Query: 108 FYWVVSGGDMLMQDAPRLYWL 128
           FYWV +GG  L QD+P+LYWL
Sbjct: 212 FYWVSAGGQALAQDSPQLYWL 232


>Medtr4g102870.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr4:42646068-42652015 | 20130731
          Length = 371

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 12/138 (8%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXX------ 56
           WN  F++ +  +L  +  E P++P+RLWI+GYALQC+LHVV V FEY             
Sbjct: 80  WNFVFIIAAVTVLILSRNESPSSPLRLWILGYALQCVLHVVCVCFEYRRRVRMRGEVNGN 139

Query: 57  ------XXXXXXLVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYW 110
                       L                          K  E+ NT  SFIWW++GFYW
Sbjct: 140 GGNVVGGGGSGDLSFDSMDSSGQYVNLAQYGDDGSTSMAKHLESANTMFSFIWWVIGFYW 199

Query: 111 VVSGGDMLMQDAPRLYWL 128
           V + G  L+ D+P LYWL
Sbjct: 200 VSADGQDLIHDSPNLYWL 217


>Medtr7g088500.1 | E3 ubiquitin protein ligase RIE1-like protein |
           HC | chr7:34479004-34482328 | 20130731
          Length = 297

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 24/128 (18%)

Query: 1   MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
           M WN+AFVVV+AA++  T  E+P+TP+RLW+ GYA +CLLHV  V+ E+           
Sbjct: 44  MVWNLAFVVVAAAVILSTFNERPSTPLRLWLCGYAFECLLHVAFVFSEFRVTTRDSFSHT 103

Query: 61  XXLVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQ 120
              +                         K+ E +NT  S +WW+ GFYW+V GG  L++
Sbjct: 104 PYSI------------------------AKKLEPMNTLASSVWWVFGFYWIVVGGQPLLE 139

Query: 121 DAPRLYWL 128
           D+PRLYWL
Sbjct: 140 DSPRLYWL 147


>Medtr7g076010.1 | RING zinc finger protein, putative | HC |
           chr7:28563510-28559568 | 20130731
          Length = 366

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 1   MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
           ++WN++F+VVS  +L  +  E+P  P+R+WI+GY LQ L+H V V  E+           
Sbjct: 83  IAWNLSFLVVSVVVLGLSSEEEPCVPLRVWILGYLLQGLVHSVCVVLEFRRRRRGSYLED 142

Query: 61  XXLVEXX----XXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGD 116
              V                             K  E+ NT +SFIWW++GFYWV  GG 
Sbjct: 143 DDSVLENGLRWSFSSESDSDFASEHESEENSIIKHIESANTILSFIWWILGFYWVTVGGQ 202

Query: 117 MLMQDAPRLYWL 128
            L +D+P+LYWL
Sbjct: 203 SLTKDSPQLYWL 214