Miyakogusa Predicted Gene

Lj0g3v0314369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314369.1 Non Characterized Hit- tr|B4FDL5|B4FDL5_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,58.44,1e-18,uppS:
di-trans,poly-cis-decaprenylcistransferase,
Di-trans-poly-cis-decaprenylcistransferase-like; Up,CUFF.21227.1
         (355 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g095500.1 | undecaprenyl pyrophosphate synthase | HC | chr...   605   e-173
Medtr8g073540.1 | undecaprenyl pyrophosphate synthase | HC | chr...   592   e-169
Medtr8g073540.2 | undecaprenyl pyrophosphate synthase | HC | chr...   592   e-169
Medtr5g070210.1 | undecaprenyl pyrophosphate synthase | HC | chr...    90   3e-18
Medtr5g070230.1 | undecaprenyl pyrophosphate synthase | LC | chr...    74   2e-13
Medtr5g070220.1 | undecaprenyl pyrophosphate synthase | HC | chr...    59   1e-08
Medtr5g070250.1 | undecaprenyl pyrophosphate synthase | LC | chr...    51   1e-06

>Medtr1g095500.1 | undecaprenyl pyrophosphate synthase | HC |
           chr1:42959206-42961547 | 20130731
          Length = 360

 Score =  605 bits (1561), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/360 (80%), Positives = 317/360 (88%), Gaps = 5/360 (1%)

Query: 1   MQKSTGGITSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNLGEGDGHR 60
           MQKS G ITSHLL GL C LRRC+FA+LS GP+PNHIAFIMDGNRRYA++RN+GEGDGH+
Sbjct: 1   MQKSAGSITSHLLGGLYCCLRRCIFAVLSAGPLPNHIAFIMDGNRRYARRRNMGEGDGHK 60

Query: 61  AGFAALLSILRYCYELRVRYVTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIIN 120
           AGF+ALLS+LRYCYEL ++YVTVYAFSIDNF+RKPKEV+TFMELMREKIEELLQQESIIN
Sbjct: 61  AGFSALLSVLRYCYELGIKYVTVYAFSIDNFRRKPKEVQTFMELMREKIEELLQQESIIN 120

Query: 121 EYGVRLHFIGNLQLLADPVRHAVEKAMRVTAHNKERVLLICVAYTSRDEIVHAVEESCKD 180
           EYGVRLHFIGN+QLL +PVR A EKAMRVTAHN+ERVLLICVAYTSRDEIVHAV+ESCKD
Sbjct: 121 EYGVRLHFIGNMQLLTEPVRVAAEKAMRVTAHNQERVLLICVAYTSRDEIVHAVQESCKD 180

Query: 181 KWNEVQASKEAKVSNDAFARINEGQERNGLDLHFQDS----GTKICSRIVDRVEGG-VKD 235
           KWNE+Q SKE KVSN  F RIN+G +RNGLDL+F +S     TK CS + +  EG   KD
Sbjct: 181 KWNEIQPSKEDKVSNGEFTRINQGLKRNGLDLNFHNSCNENETKACSILHEEAEGAEEKD 240

Query: 236 GLLEHNAEKHDCNYSEAEITSCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPD 295
            LLE N +KHD NYSE EITSCNG VEITEER+YKQ  + SIKLVD+EKHMYMAVAPDPD
Sbjct: 241 ALLEQNVKKHDDNYSEGEITSCNGTVEITEERKYKQHQIASIKLVDIEKHMYMAVAPDPD 300

Query: 296 IFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 355
           I IRTSG ARLSNFLLWQTS CPLYAPK LWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF
Sbjct: 301 ILIRTSGEARLSNFLLWQTSACPLYAPKVLWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 360


>Medtr8g073540.1 | undecaprenyl pyrophosphate synthase | HC |
           chr8:31155356-31158135 | 20130731
          Length = 360

 Score =  592 bits (1525), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/360 (78%), Positives = 311/360 (86%), Gaps = 5/360 (1%)

Query: 1   MQKSTGGITSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNLGEGDGHR 60
           MQKS G IT HLL GL C LRRC+FA+LS GP+PNHIAFIMDGNRRYA++RNLGEGDGH+
Sbjct: 1   MQKSAGSITGHLLGGLYCCLRRCIFAVLSAGPLPNHIAFIMDGNRRYARRRNLGEGDGHK 60

Query: 61  AGFAALLSILRYCYELRVRYVTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIIN 120
           AGF+ALLS+LRYCYEL ++YVTVYAFSIDNF+RKPKEV+TFMELMREKIEELLQQESIIN
Sbjct: 61  AGFSALLSVLRYCYELGIKYVTVYAFSIDNFRRKPKEVQTFMELMREKIEELLQQESIIN 120

Query: 121 EYGVRLHFIGNLQLLADPVRHAVEKAMRVTAHNKERVLLICVAYTSRDEIVHAVEESCKD 180
           EYGVRLHFIGN+QLL +PVR A E+AMRVTAHN+ERVLLICVAYTSRDEIVHAV+ESCKD
Sbjct: 121 EYGVRLHFIGNMQLLTEPVRIAAERAMRVTAHNQERVLLICVAYTSRDEIVHAVQESCKD 180

Query: 181 KWNEVQASKEAKVSNDAFARINEGQERNGLDLHFQD----SGTKICSRIVDRVEG-GVKD 235
           KWNE+Q SK  KVSN    RIN+G +RNGL+ HF D    +GTK CS + +  EG G KD
Sbjct: 181 KWNEIQPSKSDKVSNGEITRINQGPKRNGLNFHFHDPCKENGTKACSNLHEEGEGAGEKD 240

Query: 236 GLLEHNAEKHDCNYSEAEITSCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPD 295
            L E N EK   N SE EITSCNG+VEITEE++YKQ  + SIKLVD+EKHMYM VAPDPD
Sbjct: 241 ALFEQNIEKSSDNCSEGEITSCNGIVEITEEQKYKQGEIASIKLVDIEKHMYMTVAPDPD 300

Query: 296 IFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 355
           I IRTSG ARLSNFLLWQTS CPLYAPK LWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF
Sbjct: 301 ILIRTSGEARLSNFLLWQTSACPLYAPKVLWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 360


>Medtr8g073540.2 | undecaprenyl pyrophosphate synthase | HC |
           chr8:31155573-31158135 | 20130731
          Length = 360

 Score =  592 bits (1525), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/360 (78%), Positives = 311/360 (86%), Gaps = 5/360 (1%)

Query: 1   MQKSTGGITSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNLGEGDGHR 60
           MQKS G IT HLL GL C LRRC+FA+LS GP+PNHIAFIMDGNRRYA++RNLGEGDGH+
Sbjct: 1   MQKSAGSITGHLLGGLYCCLRRCIFAVLSAGPLPNHIAFIMDGNRRYARRRNLGEGDGHK 60

Query: 61  AGFAALLSILRYCYELRVRYVTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIIN 120
           AGF+ALLS+LRYCYEL ++YVTVYAFSIDNF+RKPKEV+TFMELMREKIEELLQQESIIN
Sbjct: 61  AGFSALLSVLRYCYELGIKYVTVYAFSIDNFRRKPKEVQTFMELMREKIEELLQQESIIN 120

Query: 121 EYGVRLHFIGNLQLLADPVRHAVEKAMRVTAHNKERVLLICVAYTSRDEIVHAVEESCKD 180
           EYGVRLHFIGN+QLL +PVR A E+AMRVTAHN+ERVLLICVAYTSRDEIVHAV+ESCKD
Sbjct: 121 EYGVRLHFIGNMQLLTEPVRIAAERAMRVTAHNQERVLLICVAYTSRDEIVHAVQESCKD 180

Query: 181 KWNEVQASKEAKVSNDAFARINEGQERNGLDLHFQD----SGTKICSRIVDRVEG-GVKD 235
           KWNE+Q SK  KVSN    RIN+G +RNGL+ HF D    +GTK CS + +  EG G KD
Sbjct: 181 KWNEIQPSKSDKVSNGEITRINQGPKRNGLNFHFHDPCKENGTKACSNLHEEGEGAGEKD 240

Query: 236 GLLEHNAEKHDCNYSEAEITSCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPD 295
            L E N EK   N SE EITSCNG+VEITEE++YKQ  + SIKLVD+EKHMYM VAPDPD
Sbjct: 241 ALFEQNIEKSSDNCSEGEITSCNGIVEITEEQKYKQGEIASIKLVDIEKHMYMTVAPDPD 300

Query: 296 IFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 355
           I IRTSG ARLSNFLLWQTS CPLYAPK LWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF
Sbjct: 301 ILIRTSGEARLSNFLLWQTSACPLYAPKVLWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 360


>Medtr5g070210.1 | undecaprenyl pyrophosphate synthase | HC |
           chr5:29727187-29725080 | 20130731
          Length = 310

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 13/157 (8%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+A IMDGN R+AK R L    GH AG  +L  ++  CY   ++ +TV+AFS DN+ 
Sbjct: 78  MPKHVAVIMDGNGRWAKMRGLPASAGHVAGIKSLRRMVMLCYSWGIKVLTVFAFSTDNWI 137

Query: 93  RKPKEVETFMELMREKIE---ELLQQESIINEYGVRLHFIGNLQLLADPVRHAVEKAMRV 149
           R   EVE  M L    I    E L++E      G+++  IG+   L   ++  +  A   
Sbjct: 138 RPKVEVEFLMSLFERTINSEIEALERE------GIQISVIGDTSKLPKSLKSMIASAEES 191

Query: 150 TAHNKERVLLICVAYTSRDEIVHAVEESCKDKWNEVQ 186
           T  N +  L++ V+Y+ + ++V A    CK    +VQ
Sbjct: 192 TKENPKFQLILAVSYSGKYDLVQA----CKSVAQKVQ 224



 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 292 PDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQRHH 345
           P PD+ IRTSG  R+SNFLLWQ +   L+  + LWP+ G    + A+ +FQ   
Sbjct: 250 PYPDLLIRTSGELRVSNFLLWQLAYTELFFNRKLWPDFGKDEFIEALTSFQNRQ 303


>Medtr5g070230.1 | undecaprenyl pyrophosphate synthase | LC |
           chr5:29732669-29730600 | 20130731
          Length = 194

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+A IMDGN R+AK R L   +GH AG  +L ++++ C    ++ +T++ FS DN+ 
Sbjct: 45  IPKHVAVIMDGNGRWAKMRGLPLSEGHTAGMQSLKTMVKMCLRWEIKVLTIFMFSTDNWI 104

Query: 93  RKPKEVETFMELMREKI----EELLQQESIINEYGVR 125
           R   EVE    L+   I    E +++ + I+NE  ++
Sbjct: 105 RPKLEVEFLFSLLERIINSETEAIMRSQQILNESEIK 141


>Medtr5g070220.1 | undecaprenyl pyrophosphate synthase | HC |
           chr5:29729304-29728879 | 20130731
          Length = 141

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 292 PDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQRHH 345
           P+PD+ IRTSG  R+SNF+LWQ +   L+  + LWP+ G    V A+  FQ+  
Sbjct: 81  PNPDLLIRTSGELRVSNFMLWQLAYAELFFNQKLWPDFGKDEFVEALSFFQKRQ 134


>Medtr5g070250.1 | undecaprenyl pyrophosphate synthase | LC |
           chr5:29745746-29743237 | 20130731
          Length = 226

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 292 PDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQR 343
           P PD+ IRT G  R+SNFLLWQ +   L+  + LWP+      V A+ +FQ+
Sbjct: 165 PYPDLLIRTGGELRVSNFLLWQLAYTELFFNRKLWPDFEKNDFVEALSSFQQ 216