Miyakogusa Predicted Gene

Lj0g3v0313489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313489.1 tr|F1CZQ3|F1CZQ3_9LAMI Superoxide dismutase
OS=Haberlea rhodopensis GN=FSD PE=2
SV=1,54.05,0.00000000000002,seg,NULL; Fe,Mn superoxide dismutase
(SOD), C-terminal domain,Manganese/iron superoxide dismutase,
C,gene.g24438.t1.1
         (85 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g048990.1 | superoxide dismutase | HC | chr1:18924069-1892...    74   4e-14
Medtr3g078860.1 | superoxide dismutase | HC | chr3:35607946-3560...    50   6e-07

>Medtr1g048990.1 | superoxide dismutase | HC |
           chr1:18924069-18927272 | 20130731
          Length = 311

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 39/41 (95%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIVA 52
           +HAYYLDYQNRRP++ISVF+DKLVSW+ VSSRLE+AKA +A
Sbjct: 236 EHAYYLDYQNRRPEYISVFLDKLVSWEAVSSRLEKAKASIA 276


>Medtr3g078860.1 | superoxide dismutase | HC |
           chr3:35607946-35603989 | 20130731
          Length = 262

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIV 51
           +HAYYLDY+N R  +++VF++ LVSW+  + RL   +A V
Sbjct: 213 EHAYYLDYKNDRAKYVNVFLNHLVSWNAATERLTWGEAFV 252