Miyakogusa Predicted Gene

Lj0g3v0313299.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313299.2 Non Characterized Hit- tr|I1KD41|I1KD41_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,89.44,0,no
description,NULL; Helicase_C,Helicase, C-terminal; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NUL,CUFF.21152.2
         (540 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g461560.1 | DEAD-box ATP-dependent RNA helicase, putative ...   989   0.0  
Medtr2g042440.2 | RecQ family ATP-dependent DNA helicase | HC | ...    55   1e-07
Medtr2g042440.1 | RecQ family ATP-dependent DNA helicase | HC | ...    55   2e-07

>Medtr2g461560.1 | DEAD-box ATP-dependent RNA helicase, putative | HC
            | chr2:25426629-25443935 | 20130731
          Length = 1196

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/540 (86%), Positives = 501/540 (92%), Gaps = 3/540 (0%)

Query: 1    MLHISILPHHRQFSRVLSNLRFVVIDETHTYKGAFGSHTALILRRLRRLCSHVYGAVPSF 60
            MLHI+ILPHHR F R+LSNLRF+VIDETHTYKGAFGSHTALILRRL+RLCSHVYGAVPSF
Sbjct: 560  MLHITILPHHRLFRRILSNLRFLVIDETHTYKGAFGSHTALILRRLKRLCSHVYGAVPSF 619

Query: 61   VFSTATSANPLEHSMELANLPTLELFQNDGSPSARKLFILWNPILRPKDILKKAQFAIGN 120
            +FSTATSANP EHSMELANL T+ELFQ DGSPSARKLFILWNP+LRPK    KA  A+ N
Sbjct: 620  LFSTATSANPHEHSMELANLSTVELFQKDGSPSARKLFILWNPVLRPKATFIKAHLAMDN 679

Query: 121  NELADESANFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRKLCELVLCYTREILHDTAPH 180
            NELADESANFVRSSPIVDVSRL AEMVQHGLRCIAFCKSRKLCELVL YTREILH+TAPH
Sbjct: 680  NELADESANFVRSSPIVDVSRLLAEMVQHGLRCIAFCKSRKLCELVLSYTREILHETAPH 739

Query: 181  LVDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIA 240
            L+DS+CAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIA
Sbjct: 740  LLDSVCAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIA 799

Query: 241  SLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKNPKKLFERPIECCHIDSRNKQVLEQHM 300
            SLWQQAGRGGRRDR SLA+YVAFGGPLDQYFMKNP+KLF+RPIECCHIDS+NKQVLEQH+
Sbjct: 800  SLWQQAGRGGRRDRSSLAIYVAFGGPLDQYFMKNPRKLFDRPIECCHIDSQNKQVLEQHL 859

Query: 301  ACAALEHPLNVHYDEKYFGSCLESVLISLKARGYLRFDLSSVPSSRIWHYIGPEKSPSQA 360
             CAA EHPL+V YDE+YFG+CLESVL SLK RGYL  DLS  P  RIW+YIGP+K PSQA
Sbjct: 860  VCAAHEHPLSVQYDEQYFGACLESVLNSLKDRGYLCSDLSDSP--RIWNYIGPQKLPSQA 917

Query: 361  VNIRAIETVRYSVIDQKKNEVLEEVEESKAFFQVYEGAVYMCQGKTYLVEKLDLSNKTAF 420
            VNIRAIETVRYSVIDQKK +VLEE+EESKAFFQVY+GAVY+ QGKTYLVEKLDLS+KTAF
Sbjct: 918  VNIRAIETVRYSVIDQKKEQVLEEIEESKAFFQVYDGAVYLRQGKTYLVEKLDLSSKTAF 977

Query: 421  CKEADLKYYTKTRDYTDIHVIGGNIAYPVKVSTNMLPKTNARAHVCKVTTTWFGFYRIWR 480
            CKEADLKYYTKTRDYTDIHVIGGNIAYPV + + M P TN RA+VC+VTTTWFGFYRIWR
Sbjct: 978  CKEADLKYYTKTRDYTDIHVIGGNIAYPV-IDSTMFPNTNVRANVCQVTTTWFGFYRIWR 1036

Query: 481  GSNQIFDTVDLALPQYSYESQAVWIPVPQSIKEAVVKQNYDFRGGLHAASHAVLHVVPLH 540
            GSNQI D VDLALP YSY+SQAVW+PVP SIKEAVVK+NYDFRGGLHAASHAVLHVVPLH
Sbjct: 1037 GSNQIIDAVDLALPPYSYQSQAVWVPVPPSIKEAVVKKNYDFRGGLHAASHAVLHVVPLH 1096


>Medtr2g042440.2 | RecQ family ATP-dependent DNA helicase | HC |
           chr2:18525893-18516340 | 20130731
          Length = 727

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 162 LCELVLCYTREILHDTAPHLVD---SICAYRGGYIAEERRKIESAFFGGKICGVAATNAL 218
           +C ++ C  R +  D + HL     S  AY  G   + R  +   +   K   V AT A 
Sbjct: 263 VCAIIYCLERSMCDDLSAHLSQRGISCAAYHAGLNNKMRTSVLHDWISSKTKVVVATVAF 322

Query: 219 ELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAV 259
            +GID  ++ +  H   P S+ + +Q++GR GR   PS ++
Sbjct: 323 GMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSL 363


>Medtr2g042440.1 | RecQ family ATP-dependent DNA helicase | HC |
           chr2:18525936-18516322 | 20130731
          Length = 728

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 162 LCELVLCYTREILHDTAPHLVD---SICAYRGGYIAEERRKIESAFFGGKICGVAATNAL 218
           +C ++ C  R +  D + HL     S  AY  G   + R  +   +   K   V AT A 
Sbjct: 263 VCAIIYCLERSMCDDLSAHLSQRGISCAAYHAGLNNKMRTSVLHDWISSKTKVVVATVAF 322

Query: 219 ELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAV 259
            +GID  ++ +  H   P S+ + +Q++GR GR   PS ++
Sbjct: 323 GMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSL 363