Miyakogusa Predicted Gene

Lj0g3v0313289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313289.1 Non Characterized Hit- tr|F6GTE7|F6GTE7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,57.81,0.000000000000004, ,CUFF.21151.1
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g461560.1 | DEAD-box ATP-dependent RNA helicase, putative ...   112   8e-26

>Medtr2g461560.1 | DEAD-box ATP-dependent RNA helicase, putative |
           HC | chr2:25426629-25443935 | 20130731
          Length = 1196

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 60/68 (88%)

Query: 11  LAWQDTKSLLAVDMVEHLKKGIGSEGQIVYIEDICARKATFSEIPTELSEKMRSALKSIG 70
           +   DT+SL+AVDMV+HLKKGIGSEGQIV+IEDICARKA +S+IP ELSEK RS LK IG
Sbjct: 392 IGCHDTESLMAVDMVDHLKKGIGSEGQIVHIEDICARKAIYSDIPAELSEKTRSTLKYIG 451

Query: 71  ISKLYSHQ 78
           +SKLYSHQ
Sbjct: 452 VSKLYSHQ 459