Miyakogusa Predicted Gene

Lj0g3v0312999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0312999.1 Non Characterized Hit- tr|I1M1F9|I1M1F9_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,45.38,0.000000000000004, ,CUFF.21129.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g019350.1 | PPR containing plant-like protein | HC | chr2:...    59   8e-10

>Medtr2g019350.1 | PPR containing plant-like protein | HC |
           chr2:6301271-6304315 | 20130731
          Length = 601

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 32/44 (72%)

Query: 78  VFDLFTKMCWSGLRASAATVLILLPAACDAGDFVVRKSLHGYCI 121
           VFDLF K   SG+RAS AT L LL AA D G FV+ KSLHGYCI
Sbjct: 195 VFDLFLKRGCSGIRASVATTLSLLSAAGDIGSFVLGKSLHGYCI 238