Miyakogusa Predicted Gene

Lj0g3v0312509.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0312509.3 Non Characterized Hit- tr|B9S6B4|B9S6B4_RICCO
Ring finger protein, putative OS=Ricinus communis GN=R,67.61,3e-19,
,CUFF.21126.3
         (79 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114240.2 | RING-finger ubiquitin ligase | HC | chr1:51552...   111   1e-25
Medtr1g114240.1 | RING-finger ubiquitin ligase | HC | chr1:51552...   111   1e-25
Medtr8g037150.1 | E3 ubiquitin ligase BIG brother-like protein |...    56   6e-09
Medtr8g036640.1 | E3 ubiquitin ligase BIG brother, putative | HC...    56   8e-09
Medtr4g065670.1 | E3 ubiquitin ligase BIG brother-like protein |...    54   3e-08
Medtr4g065670.2 | E3 ubiquitin ligase BIG brother-like protein |...    52   1e-07

>Medtr1g114240.2 | RING-finger ubiquitin ligase | HC |
           chr1:51552982-51559455 | 20130731
          Length = 339

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 59/72 (81%)

Query: 1   MDEHVNNSQDAREDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGSDQHG 60
           M+EH  NSQDA EDVD DELSYE+LLALGEVVG ES GL TDTIA  PSV YK GSDQ G
Sbjct: 224 MEEHAANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKAGSDQLG 283

Query: 61  SNDSCVICRVGW 72
           SNDSCVICRV +
Sbjct: 284 SNDSCVICRVDY 295


>Medtr1g114240.1 | RING-finger ubiquitin ligase | HC |
           chr1:51552982-51559455 | 20130731
          Length = 333

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 59/72 (81%)

Query: 1   MDEHVNNSQDAREDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGSDQHG 60
           M+EH  NSQDA EDVD DELSYE+LLALGEVVG ES GL TDTIA  PSV YK GSDQ G
Sbjct: 218 MEEHAANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKAGSDQLG 277

Query: 61  SNDSCVICRVGW 72
           SNDSCVICRV +
Sbjct: 278 SNDSCVICRVDY 289


>Medtr8g037150.1 | E3 ubiquitin ligase BIG brother-like protein | HC
           | chr8:13713285-13707137 | 20130731
          Length = 247

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 12  REDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGS--DQHGSNDSCVICR 69
           ++++D D ++YE+LL LGE VG +S GLP + I   P+ KYK GS   +  S   CV+C+
Sbjct: 141 QDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKRCVVCQ 200

Query: 70  VGWTMRTG 77
           +  T R G
Sbjct: 201 M--TYRRG 206


>Medtr8g036640.1 | E3 ubiquitin ligase BIG brother, putative | HC |
           chr8:13654196-13648887 | 20130731
          Length = 286

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 12  REDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGS--DQHGSNDSCVICR 69
           ++++D D ++YE+LL LGE VG +S GLP + I   P+ KYK GS   +  S   CV+C+
Sbjct: 139 QDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKRCVVCQ 198

Query: 70  VGWTMRTG 77
           +  T R G
Sbjct: 199 M--TYRRG 204


>Medtr4g065670.1 | E3 ubiquitin ligase BIG brother-like protein | HC
           | chr4:24500958-24495700 | 20130731
          Length = 248

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 4   HVNNSQDAR----EDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTG--SD 57
           H +NS D++    +++D D ++YE+LL LGE VG +S GL  + I+  P  K+K G    
Sbjct: 129 HHSNSNDSQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKFKCGFFFR 188

Query: 58  QHGSNDSCVICRVGW 72
           +   N+ CVIC++ +
Sbjct: 189 KKSRNERCVICQMEY 203


>Medtr4g065670.2 | E3 ubiquitin ligase BIG brother-like protein | HC
           | chr4:24500918-24495700 | 20130731
          Length = 255

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 12  REDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTG--SDQHGSNDSCVICR 69
           ++++D D ++YE+LL LGE VG +S GL  + I+  P  K+K G    +   N+ CVIC+
Sbjct: 148 QDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKFKCGFFFRKKSRNERCVICQ 207

Query: 70  VGW 72
           + +
Sbjct: 208 MEY 210