Miyakogusa Predicted Gene

Lj0g3v0312149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0312149.1 tr|I1JBA7|I1JBA7_SOYBN Protein translocase
subunit SecA OS=Glycine max GN=secA PE=3 SV=1,90,0,seg,NULL; SECA
INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM,NULL; P-loop
containing nucl,CUFF.21068.1
         (441 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g086050.1 | preprotein translocase subunit SecA | HC | chr...   815   0.0  
Medtr3g088555.3 | preprotein translocase subunit SecA | HC | chr...   312   3e-85
Medtr3g088555.1 | preprotein translocase subunit SecA | HC | chr...   312   3e-85
Medtr3g088555.2 | preprotein translocase subunit SecA | HC | chr...   304   9e-83

>Medtr1g086050.1 | preprotein translocase subunit SecA | HC |
           chr1:38505040-38492763 | 20130731
          Length = 1011

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/460 (87%), Positives = 415/460 (90%), Gaps = 19/460 (4%)

Query: 1   MQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFES 60
           MQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTA+TE TEFES
Sbjct: 388 MQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTASTEITEFES 447

Query: 61  IYKLKVTIVPTNKPMIRKDDSDVVFRATTGKWRAVVVEISRMHKTGRPVLVGTTSVEQSD 120
           IYKLKVTIVPTNKPMIRKD+SDVVFRAT GKWRAVVVEISRMHKTGRPVLVGTTSVEQSD
Sbjct: 448 IYKLKVTIVPTNKPMIRKDESDVVFRATRGKWRAVVVEISRMHKTGRPVLVGTTSVEQSD 507

Query: 121 SLSEQLKEVGIPHEVLNAKPENVEREAEIVTQSGRLGAVTIATNMAGRGTDIILGGNAEF 180
           SLSEQLKE GIPHEVLNAKPENVEREAEIV QSGRLGAVTIATNMAGRGTDIILGGNAEF
Sbjct: 508 SLSEQLKEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEF 567

Query: 181 MARLKLREILMPRVVKPAEGEFVSVKKPPPSKIWKVNEKLFPCQLSKINXXXXXXXXXXX 240
           MARLKLREILMPRVVK  EG+FVSVKKPPP+K WKVN+KLFPCQLS  N           
Sbjct: 568 MARLKLREILMPRVVKLTEGDFVSVKKPPPAKTWKVNDKLFPCQLSNKNTELAEEAVQLA 627

Query: 241 XXTWGKRSLTELEAEERLSYSCEKGPAQDEVIAELRNAFLEISKEYKVFTEEERKKVVAA 300
              WGKRSLTELEAEERLSYSCEKGPAQDEVIA LRNAFLEISKEYK+FTEEERKKVVAA
Sbjct: 628 VKAWGKRSLTELEAEERLSYSCEKGPAQDEVIAALRNAFLEISKEYKIFTEEERKKVVAA 687

Query: 301 GGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMRAFR 360
           GGL VVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLM+AFR
Sbjct: 688 GGLIVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMKAFR 747

Query: 361 VEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQ----------------- 403
           VEDLPIES+MLTKALDEAQ+KVENYFFDIRKQLFE+DEVLNSQ                 
Sbjct: 748 VEDLPIESQMLTKALDEAQKKVENYFFDIRKQLFEYDEVLNSQRDRVYTERRRALQSDNL 807

Query: 404 --ILIEYAELTMDDILEANIGSDSTKDSWDLEKLIAKIQQ 441
             +LIEYAELT+DDILEANIGSD+ KDSWDL+KLIAKIQQ
Sbjct: 808 QSLLIEYAELTIDDILEANIGSDAPKDSWDLDKLIAKIQQ 847


>Medtr3g088555.3 | preprotein translocase subunit SecA | HC |
           chr3:40257345-40273302 | 20130731
          Length = 976

 Score =  312 bits (800), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 199/478 (41%), Positives = 267/478 (55%), Gaps = 48/478 (10%)

Query: 4   RRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYK 63
           RRWS+G+HQAVEAKE L IQ ++V +A I+YQ+ F  +PKL GMTGTA TE  EF  +++
Sbjct: 383 RRWSEGIHQAVEAKECLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 442

Query: 64  LKVTIVPTNKPMIRKDDSDVVFRATTGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLS 123
             V  VPTN P IRKD     F    GKW  V  E+  M + GRPVLVGTTSVE S+ L+
Sbjct: 443 TPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLA 502

Query: 124 EQLKEVGIPHEVLNAKPENVEREAEIVTQSGRLGAVTIATNMAGRGTDIILGGNAEFMAR 183
             L+E  IPH VLNA+P+   REAEIV Q+GR  A+TI+TNMAGRGTDIILGGN + +AR
Sbjct: 503 GLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAR 562

Query: 184 LKLREILM-------PRVVKPAEGEFVSVKKPPPSKIWKVNEKLFP--CQLSKINXXXXX 234
             + + ++       P  V  +E   +S K  P  K+   +  L      ++K       
Sbjct: 563 GIIEDSVVSFLTREDPNSVHASEA--ISEKMLPKIKVGSSSLALLARTALMAKY-----V 615

Query: 235 XXXXXXXXTWGKRSLTELEA-EERLSYSCEK----GPAQDEVI---AELRNAFLEISKEY 286
                   T+ K     LE+ E  LSY  E+       + E+    + L  A+L + K+ 
Sbjct: 616 SKSESKSWTYQKAISFILESIEMSLSYGSEELEKLANEESEMYPLGSTLALAYLSVLKDC 675

Query: 287 KVFTEEERKKVVAAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRI 346
           +     E  +V   GGLHV+GT  HESRRIDNQLRGR+GRQGDPGS+RF +SL+D +F+ 
Sbjct: 676 EEHCLLEGSEVKRVGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQK 735

Query: 347 FGGDR---IQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLN-- 401
           F  D    ++ + +    EDLPIE   + K L   Q   E +FF IRK L EFDEVL   
Sbjct: 736 FNFDTEWAVRLISKITNDEDLPIEGGAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQ 795

Query: 402 -------------------SQILIEYAELTMDDILEANIGSDSTKDSWDLEKLIAKIQ 440
                              SQ +++Y +  +D+I+ +NI       SW L  L+ + +
Sbjct: 796 RKHVYDLRQLILIGDDESCSQHILQYMQAVVDEIVFSNIDPVKHPRSWGLSNLLKEFK 853


>Medtr3g088555.1 | preprotein translocase subunit SecA | HC |
           chr3:40257481-40274277 | 20130731
          Length = 1044

 Score =  312 bits (800), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 199/478 (41%), Positives = 267/478 (55%), Gaps = 48/478 (10%)

Query: 4   RRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYK 63
           RRWS+G+HQAVEAKE L IQ ++V +A I+YQ+ F  +PKL GMTGTA TE  EF  +++
Sbjct: 383 RRWSEGIHQAVEAKECLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 442

Query: 64  LKVTIVPTNKPMIRKDDSDVVFRATTGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLS 123
             V  VPTN P IRKD     F    GKW  V  E+  M + GRPVLVGTTSVE S+ L+
Sbjct: 443 TPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLA 502

Query: 124 EQLKEVGIPHEVLNAKPENVEREAEIVTQSGRLGAVTIATNMAGRGTDIILGGNAEFMAR 183
             L+E  IPH VLNA+P+   REAEIV Q+GR  A+TI+TNMAGRGTDIILGGN + +AR
Sbjct: 503 GLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAR 562

Query: 184 LKLREILM-------PRVVKPAEGEFVSVKKPPPSKIWKVNEKLFP--CQLSKINXXXXX 234
             + + ++       P  V  +E   +S K  P  K+   +  L      ++K       
Sbjct: 563 GIIEDSVVSFLTREDPNSVHASEA--ISEKMLPKIKVGSSSLALLARTALMAKY-----V 615

Query: 235 XXXXXXXXTWGKRSLTELEA-EERLSYSCEK----GPAQDEVI---AELRNAFLEISKEY 286
                   T+ K     LE+ E  LSY  E+       + E+    + L  A+L + K+ 
Sbjct: 616 SKSESKSWTYQKAISFILESIEMSLSYGSEELEKLANEESEMYPLGSTLALAYLSVLKDC 675

Query: 287 KVFTEEERKKVVAAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRI 346
           +     E  +V   GGLHV+GT  HESRRIDNQLRGR+GRQGDPGS+RF +SL+D +F+ 
Sbjct: 676 EEHCLLEGSEVKRVGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQK 735

Query: 347 FGGDR---IQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLN-- 401
           F  D    ++ + +    EDLPIE   + K L   Q   E +FF IRK L EFDEVL   
Sbjct: 736 FNFDTEWAVRLISKITNDEDLPIEGGAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQ 795

Query: 402 -------------------SQILIEYAELTMDDILEANIGSDSTKDSWDLEKLIAKIQ 440
                              SQ +++Y +  +D+I+ +NI       SW L  L+ + +
Sbjct: 796 RKHVYDLRQLILIGDDESCSQHILQYMQAVVDEIVFSNIDPVKHPRSWGLSNLLKEFK 853


>Medtr3g088555.2 | preprotein translocase subunit SecA | HC |
           chr3:40257345-40269975 | 20130731
          Length = 796

 Score =  304 bits (779), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/419 (44%), Positives = 246/419 (58%), Gaps = 27/419 (6%)

Query: 4   RRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYK 63
           RRWS+G+HQAVEAKE L IQ ++V +A I+YQ+ F  +PKL GMTGTA TE  EF  +++
Sbjct: 383 RRWSEGIHQAVEAKECLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 442

Query: 64  LKVTIVPTNKPMIRKDDSDVVFRATTGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLS 123
             V  VPTN P IRKD     F    GKW  V  E+  M + GRPVLVGTTSVE S+ L+
Sbjct: 443 TPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLA 502

Query: 124 EQLKEVGIPHEVLNAKPENVEREAEIVTQSGRLGAVTIATNMAGRGTDIILGGNAEFMAR 183
             L+E  IPH VLNA+P+   REAEIV Q+GR  A+TI+TNMAGRGTDIILGGN + +AR
Sbjct: 503 GLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAR 562

Query: 184 LKLREILM-------PRVVKPAEGEFVSVKKPPPSKIWKVNEKLFP--CQLSKINXXXXX 234
             + + ++       P  V  +E   +S K  P  K+   +  L      ++K       
Sbjct: 563 GIIEDSVVSFLTREDPNSVHASEA--ISEKMLPKIKVGSSSLALLARTALMAKY-----V 615

Query: 235 XXXXXXXXTWGKRSLTELEA-EERLSYSCEK----GPAQDEVI---AELRNAFLEISKEY 286
                   T+ K     LE+ E  LSY  E+       + E+    + L  A+L + K+ 
Sbjct: 616 SKSESKSWTYQKAISFILESIEMSLSYGSEELEKLANEESEMYPLGSTLALAYLSVLKDC 675

Query: 287 KVFTEEERKKVVAAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRI 346
           +     E  +V   GGLHV+GT  HESRRIDNQLRGR+GRQGDPGS+RF +SL+D +F+ 
Sbjct: 676 EEHCLLEGSEVKRVGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQK 735

Query: 347 FGGDR---IQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNS 402
           F  D    ++ + +    EDLPIE   + K L   Q   E +FF IRK L EFDEVL +
Sbjct: 736 FNFDTEWAVRLISKITNDEDLPIEGGAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEA 794