Miyakogusa Predicted Gene

Lj0g3v0311659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311659.1 Non Characterized Hit- tr|I1N4P9|I1N4P9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58416
PE,50,7e-19,B12D,NADH-ubiquinone reductase complex 1 MLRQ
subunit,NODE_69686_length_624_cov_152.589737.path1.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085890.1 | NADH-ubiquinone reductase complex 1 MLRQ subun...   158   9e-40
Medtr8g080060.1 | NADH-ubiquinone reductase complex 1 MLRQ subun...   136   4e-33
Medtr3g078590.1 | NADH-ubiquinone reductase complex 1 MLRQ subun...   135   8e-33
Medtr3g085890.2 | NADH-ubiquinone reductase complex 1 MLRQ subun...   114   2e-26
Medtr7g016060.1 | NADH-ubiquinone reductase complex 1 MLRQ subun...    98   2e-21

>Medtr3g085890.1 | NADH-ubiquinone reductase complex 1 MLRQ
          subunit | HC | chr3:38860868-38862867 | 20130731
          Length = 88

 Score =  158 bits (400), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/87 (83%), Positives = 80/87 (91%)

Query: 1  MAANRWIRPEVFPLFATVGIAVGICGMQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKY 60
          MAANRWIRPEV+PLF  VG AVGIC MQLVRNI+TNPEVRVTKQNRAAGILDN +EGEKY
Sbjct: 1  MAANRWIRPEVYPLFVPVGAAVGICVMQLVRNITTNPEVRVTKQNRAAGILDNHDEGEKY 60

Query: 61 SQHFVRKFVRGKDTQIMPSINKFFSDP 87
          SQHF+R+FVRGK T+IMPS+N FFSDP
Sbjct: 61 SQHFIRRFVRGKSTEIMPSLNGFFSDP 87


>Medtr8g080060.1 | NADH-ubiquinone reductase complex 1 MLRQ
          subunit | HC | chr8:34392391-34387982 | 20130731
          Length = 91

 Score =  136 bits (342), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 72/88 (81%)

Query: 1  MAANRWIRPEVFPLFATVGIAVGICGMQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKY 60
          MA  +WI+PEV+PLFA VG  VGIC MQLVRNI TNPEVRV KQNR AG+L+N  EGE Y
Sbjct: 1  MAGFKWIKPEVYPLFAAVGTVVGICAMQLVRNICTNPEVRVNKQNRIAGVLENHAEGEAY 60

Query: 61 SQHFVRKFVRGKDTQIMPSINKFFSDPN 88
          ++H VRKF+R K  Q+MPS+NKFFS+PN
Sbjct: 61 AEHRVRKFLRNKPPQVMPSVNKFFSEPN 88


>Medtr3g078590.1 | NADH-ubiquinone reductase complex 1 MLRQ
          subunit | HC | chr3:35405162-35403046 | 20130731
          Length = 90

 Score =  135 bits (340), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 71/88 (80%)

Query: 1  MAANRWIRPEVFPLFATVGIAVGICGMQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKY 60
          MA NRWIRPEV+PLFA VG AVGIC   LVRNI  NPEVRV KQ+RAAG+L+NF EGEKY
Sbjct: 1  MATNRWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKY 60

Query: 61 SQHFVRKFVRGKDTQIMPSINKFFSDPN 88
          ++H +RKF R +  +IMP +N FF+DP+
Sbjct: 61 TEHLLRKFSRNRSPEIMPGLNSFFTDPS 88


>Medtr3g085890.2 | NADH-ubiquinone reductase complex 1 MLRQ
          subunit | HC | chr3:38861065-38862867 | 20130731
          Length = 62

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 58/61 (95%)

Query: 27 MQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKYSQHFVRKFVRGKDTQIMPSINKFFSD 86
          MQLVRNI+TNPEVRVTKQNRAAGILDN +EGEKYSQHF+R+FVRGK T+IMPS+N FFSD
Sbjct: 1  MQLVRNITTNPEVRVTKQNRAAGILDNHDEGEKYSQHFIRRFVRGKSTEIMPSLNGFFSD 60

Query: 87 P 87
          P
Sbjct: 61 P 61


>Medtr7g016060.1 | NADH-ubiquinone reductase complex 1 MLRQ
          subunit | HC | chr7:5089778-5088671 | 20130731
          Length = 86

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 58/82 (70%)

Query: 5  RWIRPEVFPLFATVGIAVGICGMQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKYSQHF 64
          RW++PEV+PL A +     +C  QL RN+  NP+VR++K  R  G+ DN EEGEKY++H 
Sbjct: 3  RWMKPEVYPLLAAMTFVTSMCVFQLTRNLLQNPDVRISKNGRTKGVFDNKEEGEKYAKHG 62

Query: 65 VRKFVRGKDTQIMPSINKFFSD 86
          +R F+R +  ++MP+IN FFS+
Sbjct: 63 LRNFLRTRPPEVMPTINHFFSE 84