Miyakogusa Predicted Gene

Lj0g3v0311329.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311329.1 Non Characterized Hit- tr|F6HVK5|F6HVK5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,83.1,3e-19,no
description,Pre-ATP-grasp fold; PHOSPHORIBOSYLAMINOIMIDAZOLE
CARBOXYLASE ATPASE-SUBUNIT,NULL; Pre,gene.g24274.t1.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC ...   107   3e-24

>Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC |
           chr1:35857963-35851754 | 20130731
          Length = 641

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 73/116 (62%), Gaps = 17/116 (14%)

Query: 1   MDQPPHLSSSLKLKQCRHPHLTIQASNQQGAVSSRLSFASLLMGNDEVPVHGLSEAXXXX 60
           M+QP  LS   KLK    PH   QA+    AVS R         N+E  VHGLSE     
Sbjct: 48  MEQPNLLS--FKLKHSHQPH---QAN---AAVSPR---------NEESVVHGLSETVVGV 90

Query: 61  XXXXXXXRMLCQAASKMAIKVMVLDPQENCPASSLSYQHRVGSFDDSATVEEFAKR 116
                  RMLCQAAS+MAIKV+VLDPQ+NCPASS S+ H VGSFDDSATV+EFAKR
Sbjct: 91  LGGGQLGRMLCQAASQMAIKVVVLDPQDNCPASSFSHHHMVGSFDDSATVQEFAKR 146