Miyakogusa Predicted Gene

Lj0g3v0311209.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311209.1 Non Characterized Hit- tr|C5WXV1|C5WXV1_SORBI
Putative uncharacterized protein Sb01g046810
OS=Sorghu,58.43,1e-18,E2F-DP heterodimerization region,NULL;
DP,Transcription factor DP, C-terminal,CUFF.21000.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g077797.1 | transcription factor DP, E2 dimerization partn...   139   6e-34
Medtr4g077803.1 | transcription factor DP, E2 dimerization partn...   133   3e-32

>Medtr4g077797.1 | transcription factor DP, E2 dimerization partner
           protein | HC | chr4:29865108-29869680 | 20130731
          Length = 342

 Score =  139 bits (350), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 75/89 (84%), Gaps = 3/89 (3%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFH--ERPENDNITHNPTDGGEGSSMSGLYHAQVP 58
           MQLVHFDFNS+PFELHDDNYVLKAM F   ERP++DN+THN  DGGEGSSMSG+Y +QVP
Sbjct: 255 MQLVHFDFNSSPFELHDDNYVLKAMDFGGGERPQSDNVTHNIADGGEGSSMSGMYQSQVP 314

Query: 59  TLVSNPAVRPPPSSPQLPGILKARVKNEH 87
             VSN  VR PP+SP LPGILKARVK EH
Sbjct: 315 QSVSNMLVR-PPTSPPLPGILKARVKQEH 342


>Medtr4g077803.1 | transcription factor DP, E2 dimerization partner
           protein | HC | chr4:29870682-29874859 | 20130731
          Length = 344

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFHERPENDNITHNPTDGGEGSSMSGLYHAQVPTL 60
           MQLVHFDFNSTPFELHDDNYVLKAM+F +R ++D +THN TDGGEGSSMSG++ +QVP  
Sbjct: 259 MQLVHFDFNSTPFELHDDNYVLKAMEFGDRTQSDIVTHNVTDGGEGSSMSGMHQSQVPPS 318

Query: 61  VSNPAVRPPPSSPQLPGILKARVKNEH 87
            S+ + R PP+SP LPGILKARVK EH
Sbjct: 319 ASSVSTR-PPTSPPLPGILKARVKQEH 344