Miyakogusa Predicted Gene

Lj0g3v0311169.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311169.1 Non Characterized Hit- tr|B9SBE6|B9SBE6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,65.22,2e-16,seg,NULL,CUFF.20994.1
         (97 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g027380.1 | hypothetical protein | HC | chr8:9662164-96612...    68   2e-12
Medtr8g099965.1 | hypothetical protein | HC | chr8:42332895-4233...    52   1e-07
Medtr3g491900.1 | transmembrane protein, putative | HC | chr3:41...    47   3e-06

>Medtr8g027380.1 | hypothetical protein | HC |
          chr8:9662164-9661291 | 20130731
          Length = 87

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 35/38 (92%), Gaps = 2/38 (5%)

Query: 16 CGGSIMSCDKLDRMANWVGANMASAFFASLERCSCINL 53
          CG  ++SCDKLDR+ANWVG N+ASAFFASLERCSCINL
Sbjct: 10 CG--LISCDKLDRVANWVGTNVASAFFASLERCSCINL 45


>Medtr8g099965.1 | hypothetical protein | HC |
          chr8:42332895-42333766 | 20130731
          Length = 86

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 31/36 (86%)

Query: 18 GSIMSCDKLDRMANWVGANMASAFFASLERCSCINL 53
          GS++S +KLD MA W+G+ ++SAFF+SLER SC+N+
Sbjct: 5  GSLISKEKLDSMATWLGSTVSSAFFSSLERFSCVNV 40


>Medtr3g491900.1 | transmembrane protein, putative | HC |
          chr3:41852311-41853159 | 20130731
          Length = 84

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 24/25 (96%)

Query: 29 MANWVGANMASAFFASLERCSCINL 53
          MA+W+G N+A+AFFASLERCSCINL
Sbjct: 16 MASWIGMNLATAFFASLERCSCINL 40