Miyakogusa Predicted Gene

Lj0g3v0311009.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311009.1 tr|B9HB15|B9HB15_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_762913 PE=4
SV=1,45.69,4e-17,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; seg,NULL,CUFF.21004.1
         (471 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130940.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   310   2e-84
Medtr4g130940.2 | ubiquitin carboxyl-terminal hydrolase | HC | c...   241   1e-63

>Medtr4g130940.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr4:54601732-54593972 | 20130731
          Length = 855

 Score =  310 bits (794), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 215/506 (42%), Positives = 282/506 (55%), Gaps = 51/506 (10%)

Query: 1   MWYTLDDNRVNHVSEREVLNQQAYMLFYVRDRKSIVPRKPVDIAKKENINTIVNGIRDSS 60
           MWYTLDD RV+HV E+EVLNQQAYMLFYVRD+KSI PRKPV+IAK+E   T V G R  S
Sbjct: 366 MWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIAKEEISKTNVIGSRYPS 425

Query: 61  TSNHVLKEYPNGLVE-----PTLSAKTMKNMSNADLLGVSVSKDTLVEQKYSLVLAESMK 115
           T  + LK+YPNG VE       L+A+T KN+ NAD   +S   D L++QK S +LA+S+ 
Sbjct: 426 TPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRIS---DALIQQKNSGILAKSLM 482

Query: 116 QDNKPASELSSC----------AQIMKDSPQSLSSIDHSEKDKYVHTDLTCMAAPVGDKT 165
            +  P SE +S             + K   + LSS+DHS KD  V  +  C+ AP GDK 
Sbjct: 483 HNETPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKDN-VSGNQKCLVAPAGDKP 541

Query: 166 NMCNESEISKEGTKDSIVPDFISQSPEKIVGTKDINIAQDPSTNLSISTSPITSSDVNWQ 225
           N+  E  + KEG    +V   +S +P+  +G      A D ++      SP   ++V+  
Sbjct: 542 NLFTEDTLLKEGVDSPLVEPIVS-NPQTFIGKH----ASDRTSPSDEKNSP---AEVDAV 593

Query: 226 AGTSAPGSAPTNAGCIVCENAVGSQGLILNESECRSLNMERLXXXXXXXXXXXXXXYQVS 285
           A   +  +   +AG +   NAV  QGL+L  S  RSL    L              Y+ S
Sbjct: 594 AAQDSVTNLSEHAGLVGTSNAVVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGS 653

Query: 286 SMQLRPIFLYMTYTG-QKKNHKRCKRRKLSLRNLNKEKLDKHXXXXXXXXXXXXXXXXXX 344
            MQL  I   M   G +KKNHK+ +R  L L+  +KEKL K+                  
Sbjct: 654 IMQLSLIRPSMRCLGPRKKNHKKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLRS 713

Query: 345 XXFAR----------TQPQMHLATSMEVEDLS----GRGERDQMHNSLMSMLTRGLEETV 390
                           Q    LAT+ +VE++S       +RDQM N   +++T+GLEETV
Sbjct: 714 SLMKHDAEREIINRMDQNCAVLATATQVENMSRCSLQDDKRDQMQN---TVVTQGLEETV 770

Query: 391 VARWDDIEIASSRALETKSSEKVKDIGYVGDEWDEELDKGKRKKLRTFKHNFDGPNIFQE 450
           VARWDD+E+ SS+ALE+K ++++  IGYVGDEWDEE D GKRKKLR  K +F GPNIFQE
Sbjct: 771 VARWDDVELPSSQALESK-TDQIARIGYVGDEWDEEYDTGKRKKLRCLKQSFGGPNIFQE 829

Query: 451 IATEKFKSKRAKLE-----GNPPFRI 471
           IATEK K KRAKL+      +PP RI
Sbjct: 830 IATEKSKLKRAKLDHSSFRNHPPIRI 855


>Medtr4g130940.2 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr4:54601732-54593972 | 20130731
          Length = 801

 Score =  241 bits (614), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 179/452 (39%), Positives = 243/452 (53%), Gaps = 46/452 (10%)

Query: 1   MWYTLDDNRVNHVSEREVLNQQAYMLFYVRDRKSIVPRKPVDIAKKENINTIVNGIRDSS 60
           MWYTLDD RV+HV E+EVLNQQAYMLFYVRD+KSI PRKPV+IAK+E   T V G R  S
Sbjct: 366 MWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIAKEEISKTNVIGSRYPS 425

Query: 61  TSNHVLKEYPNGLVE-----PTLSAKTMKNMSNADLLGVSVSKDTLVEQKYSLVLAESMK 115
           T  + LK+YPNG VE       L+A+T KN+ NAD   +S   D L++QK S +LA+S+ 
Sbjct: 426 TPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRIS---DALIQQKNSGILAKSLM 482

Query: 116 QDNKPASELSSC----------AQIMKDSPQSLSSIDHSEKDKYVHTDLTCMAAPVGDKT 165
            +  P SE +S             + K   + LSS+DHS KD  V  +  C+ AP GDK 
Sbjct: 483 HNETPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKDN-VSGNQKCLVAPAGDKP 541

Query: 166 NMCNESEISKEGTKDSIVPDFISQSPEKIVGTKDINIAQDPSTNLSISTSPITSSDVNWQ 225
           N+  E  + KEG    +V   +S +P+  +G      A D ++      SP   ++V+  
Sbjct: 542 NLFTEDTLLKEGVDSPLVEPIVS-NPQTFIGKH----ASDRTSPSDEKNSP---AEVDAV 593

Query: 226 AGTSAPGSAPTNAGCIVCENAVGSQGLILNESECRSLNMERLXXXXXXXXXXXXXXYQVS 285
           A   +  +   +AG +   NAV  QGL+L  S  RSL    L              Y+ S
Sbjct: 594 AAQDSVTNLSEHAGLVGTSNAVVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGS 653

Query: 286 SMQLRPIFLYMTYTG-QKKNHKRCKRRKLSLRNLNKEKLDKHXXXXXXXXXXXXXXXXXX 344
            MQL  I   M   G +KKNHK+ +R  L L+  +KEKL K+                  
Sbjct: 654 IMQLSLIRPSMRCLGPRKKNHKKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLRS 713

Query: 345 XXFAR----------TQPQMHLATSMEVEDLS----GRGERDQMHNSLMSMLTRGLEETV 390
                           Q    LAT+ +VE++S       +RDQM N++   +T+GLEETV
Sbjct: 714 SLMKHDAEREIINRMDQNCAVLATATQVENMSRCSLQDDKRDQMQNTV---VTQGLEETV 770

Query: 391 VARWDDIEIASSRALETKSSEKVKDIGYVGDE 422
           VARWDD+E+ SS+ALE+K ++++  IGYVGDE
Sbjct: 771 VARWDDVELPSSQALESK-TDQIARIGYVGDE 801