Miyakogusa Predicted Gene

Lj0g3v0310879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0310879.1 Non Characterized Hit- tr|D7LCK4|D7LCK4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,38.69,2e-17,coiled-coil,NULL,CUFF.20967.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g075660.1 | WD-40 repeat protein/beige protein | HC | chr7...   143   6e-35
Medtr8g035750.1 | WD-40 repeat protein/beige protein | HC | chr8...   140   5e-34

>Medtr7g075660.1 | WD-40 repeat protein/beige protein | HC |
            chr7:28381508-28350580 | 20130731
          Length = 2945

 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 103/132 (78%), Gaps = 3/132 (2%)

Query: 1    MESSSQMRRCMKRNYQGSDHLGSAANYEDYTGDNKNNGQSAPILSAKAISIDGVNEDE-Q 59
            MESSS+MRRC++RNYQGSDHLGSAA+YE+Y+ + K+  QS PILSA+AIS++ VNEDE Q
Sbjct: 1955 MESSSRMRRCLRRNYQGSDHLGSAADYEEYSEEKKD--QSTPILSAEAISLEAVNEDEEQ 2012

Query: 60   RETKDLDAKVNAIKDRVENRPTFSEAAEKIVLESLESADTQHENDEGVLQSSSAFAPGYV 119
             + ++L  +V+ ++++ +N+ + SE+AE+ V  SLES+  QH +DE + QSSSA APGYV
Sbjct: 2013 VDAENLVDRVDDVQNKGDNQLSISESAEQSVQASLESSSPQHASDEHIDQSSSAIAPGYV 2072

Query: 120  PNEFDGRVFFRL 131
            P+E D R+   L
Sbjct: 2073 PSELDERIVLEL 2084


>Medtr8g035750.1 | WD-40 repeat protein/beige protein | HC |
            chr8:13037122-13066469 | 20130731
          Length = 2925

 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 100/132 (75%), Gaps = 6/132 (4%)

Query: 1    MESSSQMRRCMKRNYQGSDHLGSAANYEDYTGDNKNNGQSAPILSAKAISIDGVNEDEQR 60
            MESSS+MRR MKRNYQGSDHLG AANYEDY+GD   N Q  P+LS +AISI  +N+++++
Sbjct: 1948 MESSSRMRRYMKRNYQGSDHLGCAANYEDYSGD--KNYQRTPVLSVEAISIATINKEKKK 2005

Query: 61   -ETKDLDAKVNAIKDRVENRPTFSEAAEKIVLESLESADTQHENDEGVLQSSSAFAPGYV 119
             ET+++DAKVN I    EN+P  S+AAE+ V  SLES  TQ ++ +GV+Q+SSAFAPG +
Sbjct: 2006 VETENMDAKVNNI---AENQPRLSDAAEETVEMSLESNATQLQSHKGVVQNSSAFAPGSI 2062

Query: 120  PNEFDGRVFFRL 131
            P+E D ++   L
Sbjct: 2063 PSEPDEKIVLEL 2074