Miyakogusa Predicted Gene
- Lj0g3v0310849.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0310849.1 CUFF.21053.1
(479 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 389 e-108
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 389 e-108
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 251 9e-67
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 251 1e-66
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 5e-66
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 5e-66
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 249 5e-66
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 240 3e-63
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 239 3e-63
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 205 1e-52
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 164 2e-40
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 145 7e-35
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 143 4e-34
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 130 4e-30
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 130 4e-30
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 130 4e-30
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 130 4e-30
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 96 1e-19
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 89 1e-17
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 4e-14
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 4e-14
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 5e-14
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 5e-14
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 5e-14
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 5e-14
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-13
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-13
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 2e-13
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 2e-13
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 2e-13
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 4e-13
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 5e-13
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 73 6e-13
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 8e-13
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 8e-13
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 69 7e-12
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 67 4e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-11
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 66 6e-11
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 9e-11
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 64 3e-10
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-10
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-10
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 64 4e-10
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-10
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-10
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 63 6e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 63 7e-10
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 63 8e-10
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 62 1e-09
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 61 2e-09
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 60 4e-09
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-09
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 7e-09
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 9e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 59 9e-09
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 59 1e-08
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 59 1e-08
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 59 2e-08
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 58 2e-08
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 58 2e-08
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 57 3e-08
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 57 3e-08
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 57 3e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 57 5e-08
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 56 9e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 55 2e-07
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 55 2e-07
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 55 2e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 2e-07
Medtr8g089990.1 | polyadenylate-binding protein II | HC | chr8:3... 55 2e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 54 2e-07
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 54 3e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-07
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-07
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 53 6e-07
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 9e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 9e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-06
Medtr1g073000.3 | polyadenylate-binding protein II | HC | chr1:3... 52 2e-06
Medtr1g073000.1 | polyadenylate-binding protein II | HC | chr1:3... 52 2e-06
Medtr1g073000.2 | polyadenylate-binding protein II | HC | chr1:3... 52 2e-06
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 51 3e-06
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 50 4e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 50 4e-06
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 50 4e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 50 4e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 5e-06
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 6e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 6e-06
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/256 (77%), Positives = 209/256 (81%), Gaps = 2/256 (0%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
MDSDQGKLFIGGISWDTNE+KLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP+VL
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D VLEDKHVIDGRTVDAKRAFSREDQQISV+SR+ +RTKKIFVGGLP
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
PTL EEKFRQYFE+YGHVTDVVVMYDQNTGRPRGFGFI+FD E+AVDRVLHK+FHDLNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 181 QVEVKRALPKDANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQNAYDGRMDSSRYMQPQ 240
QVEVKRALPKDANP +QNAYDGR D SRYMQPQ
Sbjct: 181 QVEVKRALPKDANP-GANSRMGGAGGGSGGMGGYQGYGASGGNQNAYDGRSD-SRYMQPQ 238
Query: 241 SAAGGFPPYGSSAYSA 256
SAAGGFPPYGSSAYSA
Sbjct: 239 SAAGGFPPYGSSAYSA 254
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 42/67 (62%)
Query: 386 VYGAVGGRTGSTPNSNAXXXXXXXXXXXXXXXXXXXXXXXDANGNSGYGNAAWRSEQAQA 445
VYGAVGGRTGS PNSNA D NGNSGYGNAAWRSEQAQA
Sbjct: 379 VYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYMGSGYGDTNGNSGYGNAAWRSEQAQA 438
Query: 446 TGNYGTP 452
+GNYGTP
Sbjct: 439 SGNYGTP 445
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/256 (77%), Positives = 209/256 (81%), Gaps = 2/256 (0%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
MDSDQGKLFIGGISWDTNE+KLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP+VL
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D VLEDKHVIDGRTVDAKRAFSREDQQISV+SR+ +RTKKIFVGGLP
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
PTL EEKFRQYFE+YGHVTDVVVMYDQNTGRPRGFGFI+FD E+AVDRVLHK+FHDLNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 181 QVEVKRALPKDANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQNAYDGRMDSSRYMQPQ 240
QVEVKRALPKDANP +QNAYDGR D SRYMQPQ
Sbjct: 181 QVEVKRALPKDANP-GANSRMGGAGGGSGGMGGYQGYGASGGNQNAYDGRSD-SRYMQPQ 238
Query: 241 SAAGGFPPYGSSAYSA 256
SAAGGFPPYGSSAYSA
Sbjct: 239 SAAGGFPPYGSSAYSA 254
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 42/67 (62%)
Query: 386 VYGAVGGRTGSTPNSNAXXXXXXXXXXXXXXXXXXXXXXXDANGNSGYGNAAWRSEQAQA 445
VYGAVGGRTGS PNSNA D NGNSGYGNAAWRSEQAQA
Sbjct: 379 VYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYMGSGYGDTNGNSGYGNAAWRSEQAQA 438
Query: 446 TGNYGTP 452
+GNYGTP
Sbjct: 439 SGNYGTP 445
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 251 bits (642), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 117/194 (60%), Positives = 153/194 (78%), Gaps = 6/194 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SD GKLFIGGISWDT+E++LKE+F+ YG+V+ +MR++ TG+ RGFGFVVFSDPAV
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ DKH+IDGRTV+AK+A R+DQQ ++ + RTKKIFVGGLP
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSVQGSPGPG-----RTKKIFVGGLP 114
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
T+TE F+ YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AVDRVL+K+FH+LNGK
Sbjct: 115 STITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGK 174
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 175 MVEVKRAVPKELSP 188
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/194 (60%), Positives = 153/194 (78%), Gaps = 6/194 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SD GKLFIGGISWDT+E++LKE+F+ YG+V+ +MR++ TG+ RGFGFVVFSDPAV
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ DKH+IDGRTV+AK+A R+DQQ ++ + RTKKIFVGGLP
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSVQGSPGPG-----RTKKIFVGGLP 114
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
T+TE F+ YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AVDRVL+K+FH+LNGK
Sbjct: 115 STITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGK 174
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 175 MVEVKRAVPKELSP 188
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 112/191 (58%), Positives = 149/191 (78%), Gaps = 4/191 (2%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D GKLFIGGISWDTNED+L+++F N+GDV+ +M+++ TG+ RGFGFVVF+DP+V + V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
+ +KHVIDGRTV+AK+A R+DQ + S + +RTKKIFVGGL T+
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTP----IRTKKIFVGGLASTV 117
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TE F+ YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AV++VLHK+FH+LNGK VE
Sbjct: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE 177
Query: 184 VKRALPKDANP 194
VKRA+PKD +P
Sbjct: 178 VKRAVPKDLSP 188
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 112/191 (58%), Positives = 149/191 (78%), Gaps = 4/191 (2%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D GKLFIGGISWDTNED+L+++F N+GDV+ +M+++ TG+ RGFGFVVF+DP+V + V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
+ +KHVIDGRTV+AK+A R+DQ + S + +RTKKIFVGGL T+
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTP----IRTKKIFVGGLASTV 117
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TE F+ YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AV++VLHK+FH+LNGK VE
Sbjct: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE 177
Query: 184 VKRALPKDANP 194
VKRA+PKD +P
Sbjct: 178 VKRAVPKDLSP 188
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 112/191 (58%), Positives = 149/191 (78%), Gaps = 4/191 (2%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D GKLFIGGISWDTNED+L+++F N+GDV+ +M+++ TG+ RGFGFVVF+DP+V + V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
+ +KHVIDGRTV+AK+A R+DQ + S + +RTKKIFVGGL T+
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTP----IRTKKIFVGGLASTV 117
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TE F+ YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AV++VLHK+FH+LNGK VE
Sbjct: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE 177
Query: 184 VKRALPKDANP 194
VKRA+PKD +P
Sbjct: 178 VKRAVPKDLSP 188
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 240 bits (612), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 147/194 (75%), Gaps = 6/194 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M SD GKLFIGGISWDTNE++L+E+FS YG+V +M+++ TG+ RGFGFVVF DPAV
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D V+++KH IDGR V+AK+A R+DQ V SR RT+KIFVGGL
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQN--VLSRTSGSIHGSPGPG----RTRKIFVGGLA 114
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
T+TE F++YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AVD+VL K+FH+LNGK
Sbjct: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGK 174
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 175 MVEVKRAVPKELSP 188
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 147/194 (75%), Gaps = 6/194 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M SD GKLFIGGISWDTNE++L+E+FS YG+V +M+++ TG+ RGFGFVVF DPAV
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D V+++KH IDGR V+AK+A R+DQ V SR RT+KIFVGGL
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQN--VLSRTSGSIHGSPGPG----RTRKIFVGGLA 114
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
T+TE F++YF+ +G +TDVVVMYD NT RPRGFGFI++D+E+AVD+VL K+FH+LNGK
Sbjct: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGK 174
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 175 MVEVKRAVPKELSP 188
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 133/194 (68%), Gaps = 1/194 (0%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
MDSD+ KLF+GGIS +T ED LK HF+ YGDVL++++ ++ T PRGFGFV FSD +
Sbjct: 5 MDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSA 64
Query: 61 DAVLEDKHVIDGRTVDAKRAFSR-EDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
L+D H I GR V+ ++A R E Q + +RTKKIFVGGL
Sbjct: 65 HNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNG 179
P ++ E+F++YFE +G +TDVVVM D T RPRGFGFI+FD+ED+V V+ +SFHDLNG
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNG 184
Query: 180 KQVEVKRALPKDAN 193
+QVEVKRA+P++ N
Sbjct: 185 RQVEVKRAVPREGN 198
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 121/189 (64%), Gaps = 19/189 (10%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
GK+FIGG++ +T + +HF YG++ ++ +M+++ TG+PRGFGF+ ++DP+V+D V+E
Sbjct: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE 104
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
D H+I+ + V+ KR R +V S+ RTKKIFVGG+P +TE
Sbjct: 105 DSHIINSKQVEIKRTIPRG----AVGSK--------------DFRTKKIFVGGIPSNVTE 146
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFH-DLNGKQVEV 184
++FR +F YG V D +M D +T R RGFGF++FD E+AVD +L + G QVE+
Sbjct: 147 DEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEI 206
Query: 185 KRALPKDAN 193
K+A PK AN
Sbjct: 207 KKAEPKKAN 215
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 88/120 (73%), Gaps = 4/120 (3%)
Query: 75 VDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEKFRQYFES 134
V+AK+A R+DQ + S + +RTKKIFVGGL T+TE F+ YF+
Sbjct: 3 VEAKKAVPRDDQNVFTRSNSSSHGSPAPTP----IRTKKIFVGGLASTVTESDFKNYFDQ 58
Query: 135 YGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVKRALPKDANP 194
+G +TDVVVMYD NT RPRGFGFI++D+E+AV++VLHK+FH+LNGK VEVKRA+PKD +P
Sbjct: 59 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSP 118
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
K+F+GG++ E K +F +G + + VM + NT +PRGFGF+ + ++ VL
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 67 K-HVIDGRTVDAKRAFSRE 84
H ++G+ V+ KRA ++
Sbjct: 97 TFHELNGKMVEVKRAVPKD 115
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 119/186 (63%), Gaps = 19/186 (10%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
GK+FIGG++ DT ++ ++F YG++ ++ +M++++TG+PRGFGF+ ++D +V+D V++
Sbjct: 18 GKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQ 77
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ H+I+ + V+ KR + Q + +TKKIFVGG+P T++E
Sbjct: 78 ENHIINDKQVEIKRTIPKGASQTN------------------DFKTKKIFVGGIPATVSE 119
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
++ + +F +G+V + ++ D T R RGFGF+ FD++ AVD +L + D++ QVE+
Sbjct: 120 DELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEI 179
Query: 185 KRALPK 190
K+A PK
Sbjct: 180 KKAEPK 185
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 19/188 (10%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
+Q KL + GI WD + + LKE+ S YG++ + VM+E++TG+ RGFG+V F+ V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
L +HV+ R ++ K A +E+ + + +IFV +PP++
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------------KVTRIFVARIPPSV 103
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TEE FR +FE YG +TD+ + DQ + RG GFI+F N ++V+ ++ ++ H+L G V
Sbjct: 104 TEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVV 162
Query: 184 VKRALPKD 191
V RA PK+
Sbjct: 163 VDRATPKE 170
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 29/216 (13%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+ I E+ + HF YGD+ + + +++ + RG GF+ F + ++ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVDAKRAFSREDQ------------------QISVTSRAXXXXXXXXXXXXXX 108
H + G V RA +ED IS +R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 109 VR---------TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFIS 159
+ +KKIFVG LPP E RQYF +G + DV + D RGFGF++
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 160 FDNEDAVDRVLHKSFHDLNGKQVEVKRALP-KDANP 194
F +E DRV + H++ G +V + A P DA P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATPVDDARP 307
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 19/188 (10%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
+Q KL + GI WD + + LKE+ S YG++ + VM+E++TG+ RGFG+V F+ V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
L +HV+ R ++ K A +E+ + + +IFV +PP++
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------------KVTRIFVARIPPSV 103
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TEE FR +FE YG +TD+ + DQ + RG GFI+F N ++V+ ++ ++ H+L G V
Sbjct: 104 TEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVV 162
Query: 184 VKRALPKD 191
V RA PK+
Sbjct: 163 VDRATPKE 170
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 29/216 (13%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+ I E+ + HF YGD+ + + +++ + RG GF+ F + ++ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVDAKRAFSREDQ------------------QISVTSRAXXXXXXXXXXXXXX 108
H + G V RA +ED IS +R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 109 VR---------TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFIS 159
+ +KKIFVG LPP E RQYF +G + DV + D RGFGF++
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 160 FDNEDAVDRVLHKSFHDLNGKQVEVKRALP-KDANP 194
F +E DRV + H++ G +V + A P DA P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATPVDDARP 307
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 19/188 (10%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
+Q KL + GI WD + + LKE+ S YG++ + VM+E++TG+ RGFG+V F+ V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
L +HV+ R ++ K A +E+ + + +IFV +PP++
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------------KVTRIFVARIPPSV 103
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TEE FR +FE YG +TD+ + DQ + RG GFI+F N ++V+ ++ ++ H+L G V
Sbjct: 104 TEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVV 162
Query: 184 VKRALPKD 191
V RA PK+
Sbjct: 163 VDRATPKE 170
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 29/216 (13%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+ I E+ + HF YGD+ + + +++ + RG GF+ F + ++ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVDAKRAFSREDQ------------------QISVTSRAXXXXXXXXXXXXXX 108
H + G V RA +ED IS +R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 109 VR---------TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFIS 159
+ +KKIFVG LPP E RQYF +G + DV + D RGFGF++
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 160 FDNEDAVDRVLHKSFHDLNGKQVEVKRALP-KDANP 194
F +E DRV + H++ G +V + A P DA P
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATPVDDARP 307
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 19/188 (10%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
+Q KL + GI WD + + LKE+ S YG++ + VM+E++TG+ RGFG+V F+ V
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
L +HV+ R ++ K A +E+ + + +IFV +PP++
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAK------------------KVTRIFVARIPPSV 103
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
TEE FR +FE YG +TD+ + DQ + RG GFI+F N ++V+ ++ ++ H+L G V
Sbjct: 104 TEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVV 162
Query: 184 VKRALPKD 191
V RA PK+
Sbjct: 163 VDRATPKE 170
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 28/212 (13%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+ I E+ + HF YGD+ + + +++ + RG GF+ F + ++ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVDAKRAFSREDQ------------------QISVTSRAXXXXXXXXXXXXXX 108
H + G V RA +ED IS +R
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 109 VR---------TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFIS 159
+ +KKIFVG LPP E RQYF +G + DV + D RGFGF++
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 160 FDNEDAVDRVLHKSFHDLNGKQVEVKRALPKD 191
F +E DRV + H++ G +V + A P D
Sbjct: 273 FADEGVADRVSLRP-HEICGHEVAIDSATPVD 303
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
D + KLFI G+ WDT + L+ FS YG++ V+ +K TGK +G+GFV F
Sbjct: 69 DISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLH----- 123
Query: 62 AVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+DG + + R D +++VT A V +KI+V +PP
Sbjct: 124 --------VDGALLALREPSKRIDGRVTVTQLA-AAGNSGSNTNAADVAQRKIYVSNVPP 174
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
L +K +F YG + + + +D+ TGR +GF + + + + + ++ G+Q
Sbjct: 175 DLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQ 234
Query: 182 VEVKRAL 188
+ K A+
Sbjct: 235 LNCKLAI 241
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
D+ + KLF+ G+S +T + L+ FS+YGD+ V+ +K TG+ +G+GFVV+
Sbjct: 72 DTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY------- 124
Query: 62 AVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+HV DG + K + D +++VT A V ++K+FVG +P
Sbjct: 125 -----RHV-DGAVLALKEPSKKIDGRMTVTQLA------AAGSTGGDVSSRKVFVGNVPF 172
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
++ E F YG + + + +D+ +G+ RGF F + E+ + +S ++G Q
Sbjct: 173 EVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQ 232
Query: 182 VEVKRAL 188
V K A+
Sbjct: 233 VICKFAV 239
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D LK +F +GD+L V+ ++ TGK +G+GFV F DP + +
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQIS 89
A +IDGR + A+ + D ++
Sbjct: 82 LACQNPNPMIDGRRANCNLAYQKPDPSLT 110
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVGGL + ++YF+ +G + + VV+ D+ TG+ +G+GF++F + ++
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 173 SFHDLNGKQVEVKRALPK 190
++G++ A K
Sbjct: 87 PNPMIDGRRANCNLAYQK 104
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D LK +F +GD+L V+ ++ TGK +G+GFV F DP + +
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQIS 89
A +IDGR + A+ + D ++
Sbjct: 82 LACQNPNPMIDGRRANCNLAYQKPDPSLT 110
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVGGL + ++YF+ +G + + VV+ D+ TG+ +G+GF++F + ++
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 173 SFHDLNGKQVEVKRALPK 190
++G++ A K
Sbjct: 87 PNPMIDGRRANCNLAYQK 104
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D LK +F +GD+L V+ ++ TGK +G+GFV F DP + +
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQIS 89
A +IDGR + A+ + D ++
Sbjct: 82 LACQNPNPMIDGRRANCNLAYQKPDPSLT 110
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVGGL + ++YF+ +G + + VV+ D+ TG+ +G+GF++F + ++
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 173 SFHDLNGKQVEVKRALPK 190
++G++ A K
Sbjct: 87 PNPMIDGRRANCNLAYQK 104
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D LK +F +GD+L V+ ++ TGK +G+GFV F DP + +
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQIS 89
A +IDGR + A+ + D ++
Sbjct: 82 LACQNPNPMIDGRRANCNLAYQKPDPSLT 110
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVGGL + ++YF+ +G + + VV+ D+ TG+ +G+GF++F + ++
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 173 SFHDLNGKQVEVKRALPK 190
++G++ A K
Sbjct: 87 PNPMIDGRRANCNLAYQK 104
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA-VL 60
D+ K+F+ G+ WDT L FS YG++ + + +K +GK +G+GF++F +
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+A+ E + I R + A QQ V + A +KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQ----RKIYISNVG 238
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
P L +K +F +G + + + D+ TG+P+GF + + ++ R L + + G
Sbjct: 239 PELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGH 298
Query: 181 QVEVKRAL 188
+ ++A+
Sbjct: 299 ILHCQKAI 306
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA-VL 60
D+ K+F+ G+ WDT L FS YG++ + + +K +GK +G+GF++F +
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+A+ E + I R + A QQ V + A +KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQ----RKIYISNVG 238
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
P L +K +F +G + + + D+ TG+P+GF + + ++ R L + + G
Sbjct: 239 PELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGH 298
Query: 181 QVEVKRAL 188
+ ++A+
Sbjct: 299 ILHCQKAI 306
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA-VL 60
D+ K+F+ G+ WDT L FS YG++ + + +K +GK +G+GF++F +
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+A+ E + I R + A QQ V + A +KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQ----RKIYISNVG 238
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
P L +K +F +G + + + D+ TG+P+GF + + ++ R L + + G
Sbjct: 239 PELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGH 298
Query: 181 QVEVKRAL 188
+ ++A+
Sbjct: 299 ILHCQKAI 306
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA-VL 60
D+ K+F+ G+ WDT L FS YG++ + + +K +GK +G+GF++F +
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+A+ E + I R + A QQ V + A +KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQ----RKIYISNVG 238
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
P L +K +F +G + + + D+ TG+P+GF + + ++ R L + + G
Sbjct: 239 PELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGH 298
Query: 181 QVEVKRAL 188
+ ++A+
Sbjct: 299 ILHCQKAI 306
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D+++ +F +GD+L ++ +KNTGK +G+GFV F DP +
Sbjct: 12 DTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESAR 71
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A + VIDGR + A
Sbjct: 72 RACADPNPVIDGRRANCNIA 91
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL ++ R YFE +G + + V++ D+NTG+ +G+GF++F + ++ R
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 77 PNPVIDGRRANCNIA 91
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA-VL 60
D+ K+F+ G+ WDT L FS YG++ + + +K +GK +G+GF++F +
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+A+ E + I R + A QQ V + A +KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYT----QRKIYISNVG 238
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
P L +K +F +G + + + D+ TG+P+GF + + ++ R L + + G
Sbjct: 239 PELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGH 298
Query: 181 QVEVKRAL 188
+ ++A+
Sbjct: 299 ILHCQKAI 306
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T + ++ +F +GD+L V+ +KNTG+ +G+GFV F DP A
Sbjct: 25 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A + VIDGR + A
Sbjct: 85 RACADPSPVIDGRRANCNLA 104
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E R+YFE +G + + VV+ D+NTGR +G+GF++F + +A R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 90 PSPVIDGRRANCNLA 104
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-PAV 59
+D K+F+ G+ WD + L FS YG++ + + +K +GK +G+ F++F
Sbjct: 160 VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGC 219
Query: 60 LDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
A+ + + VI RT + A S +KIFV +
Sbjct: 220 RRALKQPQKVIGNRTTSCQLA-----------SAGPVPAPPPNAPPVSEYTQRKIFVSNV 268
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNG 179
+ +K ++F+ +G V D + D+ TG+P+GF + ++ + L + G
Sbjct: 269 SSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEG 328
Query: 180 KQVEVKRAL 188
+ ++A+
Sbjct: 329 HTLYCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-PAV 59
+D K+F+ G+ WD + L FS YG++ + + +K +GK +G+ F++F
Sbjct: 160 VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGC 219
Query: 60 LDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
A+ + + VI RT + A S +KIFV +
Sbjct: 220 RRALKQPQKVIGNRTTSCQLA-----------SAGPVPAPPPNAPPVSEYTQRKIFVSNV 268
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNG 179
+ +K ++F+ +G V D + D+ TG+P+GF + ++ + L + G
Sbjct: 269 SSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEG 328
Query: 180 KQVEVKRAL 188
+ ++A+
Sbjct: 329 HTLYCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-PAV 59
+D K+F+ G+ WD + L FS YG++ + + +K +GK +G+ F++F
Sbjct: 160 VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGC 219
Query: 60 LDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
A+ + + VI RT + A S +KIFV +
Sbjct: 220 RRALKQPQKVIGNRTTSCQLA-----------SAGPVPAPPPNAPPVSEYTQRKIFVSNV 268
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNG 179
+ +K ++F+ +G V D + D+ TG+P+GF + ++ + L + G
Sbjct: 269 SSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEG 328
Query: 180 KQVEVKRAL 188
+ ++A+
Sbjct: 329 HTLYCQKAV 337
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T + ++ +F +GD+L V+ +KNTG+ +G+GFV F DP A
Sbjct: 25 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A + VIDGR + A
Sbjct: 85 RACADPSPVIDGRRANCNLA 104
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E R+YFE +G + + VV+ D+NTGR +G+GF++F + +A R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 90 PSPVIDGRRANCNLA 104
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
KLFIGG+S+ T+E L+E FS YGDVL+ ++ +++TG+ RGFGF+ F+ + L+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 66 -DKHVIDGRTVDAKRAFSR 83
D +DGRTV A R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVD 167
+ + K+F+GG+ + E R+ F YG V D ++ D++TGR RGFGFI+F +E+A
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 168 RVLHKSFHDLNGKQVEVKRALPK 190
+ +L+G+ V V A +
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
KLFIGG+S+ T+E L+E FS YGDVL+ ++ +++TG+ RGFGF+ F+ + L+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 66 -DKHVIDGRTVDAKRAFSR 83
D +DGRTV A R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVD 167
+ + K+F+GG+ + E R+ F YG V D ++ D++TGR RGFGFI+F +E+A
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 168 RVLHKSFHDLNGKQVEVKRALPK 190
+ +L+G+ V V A +
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T ++ +K++F +G++L V+ +K TG+ +G+GFV F +P A +
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ +IDGR + A
Sbjct: 72 RACVDAAPIIDGRRANCNLA 91
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL +E ++YFE +G + + VV+ D+ TGR +G+GF++F DA R
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 173 SFHDLNGKQVEVKRA 187
+ ++G++ A
Sbjct: 77 AAPIIDGRRANCNLA 91
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T ++ +K++F +G++L V+ +K TG+ +G+GFV F +P A +
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ +IDGR + A
Sbjct: 72 RACVDAAPIIDGRRANCNLA 91
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL +E ++YFE +G + + VV+ D+ TGR +G+GF++F DA R
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 173 SFHDLNGKQVEVKRA 187
+ ++G++ A
Sbjct: 77 AAPIIDGRRANCNLA 91
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S+ K+F+G + +D + +KL + F G V V+ ++T + RGFGFV S ++
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 63 VLE--DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ +DGR + +A R T R + +VG LP
Sbjct: 179 AVNKFSGFELDGRLLTVNKAAPRG------TPRLRQPRTFNSGL--------RAYVGNLP 224
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNE----DAVDRVLHKSFHD 176
+ Q F +G V V+YD+ TGR RGFGF++ NE DA+ + +SF
Sbjct: 225 WDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSF-- 282
Query: 177 LNGKQVEVKRA 187
NG+ + V A
Sbjct: 283 -NGRAIRVNVA 292
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVG LP + EK Q FE G V V+Y+++T R RGFGF++ + V+R ++K
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 173 -SFHDLNGKQVEVKRALPK 190
S +L+G+ + V +A P+
Sbjct: 183 FSGFELDGRLLTVNKAAPR 201
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ ++G + WD + L++ FS +G V + V+ ++ TG+ RGFGFV S+ A ++ +
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 66 -DKHVIDGRTVDAKRAFSR 83
D +GR + A R
Sbjct: 277 LDGQSFNGRAIRVNVAEER 295
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 10/195 (5%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+LF+G + + + +L E F N GDV V+ +K+TG+ RGFGFV S A ++A +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 66 -DKHVIDGRTVDAKRAFS----REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ +V+DGR + E+ + R ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNG 179
+ F G V + V+YD+ +GR RGFGF++F + D VD + DLNG
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 180 KQVEVKRALPKDANP 194
+ + V P D+ P
Sbjct: 265 RAIRVS---PADSRP 276
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 10/195 (5%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+LF+G + + + +L E F N GDV V+ +K+TG+ RGFGFV S A ++A +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 66 -DKHVIDGRTVDAKRAFS----REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ +V+DGR + E+ + R ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNG 179
+ F G V + V+YD+ +GR RGFGF++F + D VD + DLNG
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 180 KQVEVKRALPKDANP 194
+ + V P D+ P
Sbjct: 265 RAIRVS---PADSRP 276
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T +D L+EHF YGD+L ++ +K TG+ +G+GFV F D +
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A E +I+GR + A
Sbjct: 74 KACEEPTVIINGRRANCNIA 93
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL ++ R++FE YG + + V++ D+ TGR +G+GF++F + D+ + +
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 173 SFHDLNGKQVEVKRA 187
+NG++ A
Sbjct: 79 PTVIINGRRANCNIA 93
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T +D L+EHF YGD+L ++ +K TG+ +G+GFV F D +
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A E +I+GR + A
Sbjct: 74 KACEEPTVIINGRRANCNIA 93
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL ++ R++FE YG + + V++ D+ TGR +G+GF++F + D+ + +
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 173 SFHDLNGKQVEVKRA 187
+NG++ A
Sbjct: 79 PTVIINGRRANCNIA 93
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ KLF+GG++W+T + ++ +F +G++L V+ +K TG+ +G+GFV F DP A +
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A VIDGR + A
Sbjct: 81 RACQNPSPVIDGRRANCNIA 100
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E R YFE +G + + VV+ D+ TGR +G+GF++F + +A R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 86 PSPVIDGRRANCNIA 100
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ KLF+GG++W+T + ++ +F +G++L V+ +K TG+ +G+GFV F DP A +
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A VIDGR + A
Sbjct: 81 RACQNPSPVIDGRRANCNIA 100
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E R YFE +G + + VV+ D+ TGR +G+GF++F + +A R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 86 PSPVIDGRRANCNIA 100
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+F+ +S T +D+LK+ F +G + + VMR+ + GK + FGFV F D
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFES---TDDAARAV 270
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXX-XXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
++G+ +D K + + Q+ S + ++V L ++ +E
Sbjct: 271 EALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADE 330
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
K ++ F SYG +T VM D N G RG GF++F + R L ++NGK V K
Sbjct: 331 KLKELFSSYGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRAL----LEMNGKMVASK 384
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 28/187 (14%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S QG +FI + + L + FS++G++L+ V + +G+ +G+GFV F
Sbjct: 119 SGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQK 177
Query: 63 VLEDKHVIDGRTVDAKRA----FSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
+E ++G ++ K+ F R+ ++ S RA + +FV
Sbjct: 178 AIEK---LNGMLLNDKQVYVGPFLRKQERESTGDRA---------------KFNNVFVKN 219
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLN 178
L + T+++ ++ F +G +T VVM D + G+ + FGF++F++ D R + LN
Sbjct: 220 LSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEA----LN 274
Query: 179 GKQVEVK 185
GK+++ K
Sbjct: 275 GKKIDDK 281
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++G + + + +L + F+ G V++ V R+ T + G+G+V +S+P L+
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+ + +S D I + + IF+ L + +
Sbjct: 96 NFTPLNNRPIRIMYSHRDPSIRKSGQG------------------NIFIKNLDKAIDHKA 137
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
F S+G++ V D +G+ +G+GF+ FD E+A + + K + LN KQV V
Sbjct: 138 LHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KL+ G + + + L YG V+ +++TGK RGF FV S +AV+++
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
+D K R T R K+FVG L T+T E
Sbjct: 174 --------LDGKEFMGR-------TLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSE 218
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFH-DLNGKQVEVK 185
Q F+ +G V V++D TG+ RG+GF+S+ + +D L + +L G+ + V
Sbjct: 219 SLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVS 278
Query: 186 RA 187
A
Sbjct: 279 LA 280
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD--PAVLDAVLE 65
+++G I +E L+E FS+ G + ++R++ + +GFV + D A + V
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I G+++ A++R ++ + IFVG L P +T+
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHF-------------------HIFVGDLSPEVTD 144
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
F +Y +D VM+DQ TGR RGFGF+SF N+ + +DL GK
Sbjct: 145 ATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAI----NDLTGK 195
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ K+F+GGL + ++ R F +YG V + V+ D+ TGR RGFGF++F +E++ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 171 HKSFHDLNGKQVEVKRALPKDA 192
DLNG+ + V A + A
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQA 116
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
KLFIGG+S++ ++ L++ F+ YGDV+ V+ ++ TG+ RGFGFV F S+ + A+
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 66 DKHVIDGRTVDAKRAFSRE 84
D ++GR + A R+
Sbjct: 97 DGQDLNGRNIRVSYANDRQ 115
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
+ KLF+G +D + +KL F G V V+ + T RGFGFV S ++
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 64 LEDKHVID--GRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+E + D GR++ +A S + + T RA +I+V L
Sbjct: 167 VEKFNGYDYNGRSLVVNKA-SPKGSRPERTERAPRTFEP----------VLRIYVANLAW 215
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLHKSFHDLNGK 180
+ + Q F +G + V+YD+ TGR RGFGF++ +E + D + L G+
Sbjct: 216 EVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGR 275
Query: 181 QVEVKRA 187
+ V A
Sbjct: 276 TIRVSVA 282
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL-DAVLE 65
++++ ++W+ + +L++ FS +G +++ V+ ++ TG+ RGFGFV SD + DA+
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 66 -DKHVIDGRTVDAKRAFSR 83
D ++GRT+ A R
Sbjct: 267 LDGQSLEGRTIRVSVAEDR 285
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVG P + EK F G V V+Y++ T RGFGF++ + + + K
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 173 -SFHDLNGKQVEVKRALPKDANP 194
+ +D NG+ + V +A PK + P
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRP 192
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+S+ T+E+ L+E FS YG+VL+ ++ ++ TG+ RGFGF+ F+ + ++
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ- 101
Query: 67 KHVIDGRTVDAKR 79
+DG+ + +R
Sbjct: 102 --ALDGQDLHGRR 112
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRV 169
T K+F+GG+ + E R+ F YG V D ++ D+ TGR RGFGFI+F++ E+A +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 170 LHKSFHDLNGKQVEVKRA 187
DL+G++V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLF+GG+SW +E LK+ FS++GDV ++ +K++G+ RGFGFV+FS+ DA
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNE---DAAKSA 93
Query: 67 KHVIDGRTV 75
K +DG+ +
Sbjct: 94 KDAMDGKAL 102
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDA 165
K+FVGGL ++ E+ + F S+G VT+V ++YD+++GR RGFGF+ F NEDA
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDA 89
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
+ KLF+G +D + +KL F G V V+ + T RGFGFV S ++
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 64 LEDKHVID--GRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+E + D GR++ +A S + + T RA +I+V L
Sbjct: 167 VEKFNGYDYNGRSLVVNKA-SPKGSRPERTERAPRTFEP----------VLRIYVANLAW 215
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNE 163
+ + Q F +G + V+YD+ TGR RGFGF++ +E
Sbjct: 216 EVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDE 257
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVG P + EK F G V V+Y++ T RGFGF++ + + + K
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 173 -SFHDLNGKQVEVKRALPKDANP 194
+ +D NG+ + V +A PK + P
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRP 192
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ F+GG++W T+ + L++ FS YG+++++ ++ ++ TG+ RGFGFV F+D + +E
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 66 -DKHVIDGRTVDAKRA 80
+ +DGR + A
Sbjct: 69 MNGQDMDGRNITVNEA 84
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLH 171
+ FVGGL E + F YG + D ++ D+ TGR RGFGF++F +E ++ D +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 172 KSFHDLNGKQVEVKRA 187
+ D++G+ + V A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
KL++GGIS+ T++ L+E F+ YGDVL+ V+ ++ G+ +GFGFV F+ A L+
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 66 --DKHVIDGRTV 75
D + GRTV
Sbjct: 100 AMDNQELHGRTV 111
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 9 FIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDKH 68
++G + +E+ L E F G V+N V +++ T + +G+GFV F D ++ +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 69 VID--GRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
+I G+ + +A S++ + + V + +F+G L P + E+
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDVGA--------------------NLFIGNLDPDVDEK 126
Query: 127 KFRQYFESYG-HVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
F ++G VT+ +M D +TG RGFGFIS+D+ +A D + + L +Q+ V
Sbjct: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
Query: 185 KRALPKD 191
A KD
Sbjct: 187 SYAYKKD 193
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 13 ISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDKH---V 69
+ DT+ED LK+ FS YG + + +M+++N G + FGFV F P A +E +
Sbjct: 113 LETDTDED-LKKLFSTYGVITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEKLNGTTT 170
Query: 70 IDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEKFR 129
DG+ + RA + +++ + ++ ++ +++ L ++ +EK +
Sbjct: 171 NDGKVLYVGRAQRKCEREAELRAK----FEQEKIKRYEKLQGANLYLKNLDESINDEKLK 226
Query: 130 QYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH 171
+ F +G +T VM+D + G +GFGF++F + + ++
Sbjct: 227 EMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAIN 267
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 21/172 (12%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+F+ + + L + F+ +G VL+ V + N GK G+GFV + + +E
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIEK- 74
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+DG + K+AF + ++V L T T+E
Sbjct: 75 --LDGMLIKDKKAF------------VGYFIRRQERSENGSPKFTNVYVKNLLETDTDED 120
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNG 179
++ F +YG +T V+M D+N G + FGF++F + D+ + K LNG
Sbjct: 121 LKKLFSTYGVITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEK----LNG 167
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
LF+GGIS++T L++HFS YG VL+ ++R++ TG+PRGFGFV F+ A L+
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQ 89
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 114 IFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH-- 171
+F+GG+ + R++F YG V D ++ D+ TGRPRGFGF++F + L
Sbjct: 36 LFLGGI----SYNTLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 172 ----KSF--HDLNGKQVEVKRALPKD 191
KS DL G++V V A K
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEKS 117
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ F+GG++W T+ + L++ FS YG+++++ ++ ++ TG+ RGFGFV F++ ++ +E
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 66 -DKHVIDGRTVDAKRA 80
+ +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLH 171
+ FVGGL E + F YG + D ++ D+ TGR RGFGF++F NE ++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 172 KSFHDLNGKQVEVKRA 187
+ DL+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L+IG + +E L F++ G++ + V+R K++G G+GF F A + VL++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
I +A +AF S + V IFVG L +T+
Sbjct: 159 AGI--LMPNADQAFRLNWATFSTGDKG-----------SDNVTDLSIFVGDLAADVTDSV 205
Query: 128 FRQYF-ESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ F SY V V+YD NTGR +G+GF+ F +E + +
Sbjct: 206 LHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAM 249
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ F+GG++W T+ + L++ FS YG+++++ ++ ++ TG+ RGFGFV F++ ++ +E
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 66 -DKHVIDGRTVDAKRA 80
+ +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLH 171
+ FVGGL E + F YG + D ++ D+ TGR RGFGF++F NE ++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 172 KSFHDLNGKQVEVKRA 187
+ DL+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S +G +F+ ++ + L + F YG++L++ + R ++ GK +GFG++ F +
Sbjct: 100 SGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQFDSEESANV 158
Query: 63 VLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPT 122
++ ++G TV D+QI V + ++V L P
Sbjct: 159 AIQK---MNGSTV--------RDKQIYV---GKFIRKSERSLPDLDAKFTNLYVKNLDPV 204
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+TE+ + F S+G + + + D+N G+ +GFGF+++D+ D R +
Sbjct: 205 VTEKHLGEKFSSFGKIVSLAIKKDEN-GQSKGFGFVNYDSPDDARRAM 251
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
D+ L++ + D +E L+E FS++G +++ +V ++ N G +GFGFV F +P
Sbjct: 185 DTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAK 243
Query: 62 AVLEDKHVIDGRTVDAKRAF-SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+E ++G + +K + +R ++ + I+V +
Sbjct: 244 RAME---TMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNID 300
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHD--LN 178
+++E R +F G +T +M D + G +GFGF+ F + ++ ++ SFH +
Sbjct: 301 DNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVN-SFHGFMFH 358
Query: 179 GKQVEVKRALPKD 191
GK + V A K+
Sbjct: 359 GKPLYVSLAQRKE 371
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 88/190 (46%), Gaps = 32/190 (16%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP--AVLDAVLE 65
L++G + D ++ +L + FS++ + + + R+ ++GK +G+V F P A+ ++
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ ++G+ + + +SR D + +FV L ++
Sbjct: 72 NHSTLNGKAI--RVMWSRRDPDARKSC------------------IGNVFVKNLAESIDN 111
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNG-----K 180
F+ +G++ V+ ++ G+ +G+GF+ F+ E++ + + + LNG K
Sbjct: 112 SGLEDMFKKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIER----LNGYLVGDK 166
Query: 181 QVEVKRALPK 190
Q+ V + + K
Sbjct: 167 QIYVGKFVKK 176
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L+IG + +E L F++ G++ + V+R K++G G+GF F A + VL++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
I +A +AF R V IFVG L +T+
Sbjct: 159 AGI--LMPNADQAF-----------RLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSV 205
Query: 128 FRQYF-ESYGHVTDVVVMYDQNTGRPRGFGFISFDNE 163
+ F SY V V+YD NTGR +G+GF+ F +E
Sbjct: 206 LHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDE 242
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL-DAVLE 65
+ F+GG++W T+ L++ FS +G++ ++ V+ ++ TG+ RGFGFV F++ + DA+ E
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 66 -DKHVIDGRTVDAKRA 80
+ IDGR + A
Sbjct: 69 MNGQDIDGRNITVNEA 84
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLH 171
+ FVGGL + Q F +G +TD V+ D+ TGR RGFGF++F E ++ D +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 172 KSFHDLNGKQVEVKRA 187
+ D++G+ + V A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++ +S ED LK F YG + + +MR+ + G+ + FGFV F + +E
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVE-- 269
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTK----KIFVGGLPPTL 123
++G+ VD K + + Q+ S R V K +++ L ++
Sbjct: 270 -ALNGKKVDDKEWYVGKAQKKS--EREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSI 326
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
T+EK ++ F +G +T +M D N G RG GF++F + R L ++NGK +
Sbjct: 327 TDEKLKEMFSEFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRAL----GEMNGKMIV 381
Query: 184 VK 185
K
Sbjct: 382 SK 383
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++G + + N+ +L + F+ G V++ V R+ T + G+G+V F++P L+
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+ + +S D +SR T IF+ L T+ +
Sbjct: 94 NFTPMNNKSIRVMYSHRDP----SSRKSG--------------TANIFIKNLDKTIDHKA 135
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVKRA 187
F S+G + + D +G+ +G+GF+ F+ ED+ + K LNG + K+
Sbjct: 136 LHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDK----LNGMLINDKQV 190
Query: 188 L 188
Sbjct: 191 F 191
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 39/180 (21%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD---PAVLDAVL 64
+++G + E L+E F+ G V + R++ + +GF+ + D A+ L
Sbjct: 64 VYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 119
Query: 65 EDKHVIDGRTVDAKRAFS---REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+H+ G+ + A++ RED IFVG L P
Sbjct: 120 NGRHLF-GQPIKVNWAYASGQREDTS----------------------GHYNIFVGDLSP 156
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGK 180
+T+ F Y +D VM+DQ TGR RGFGF+SF +DA + +DL GK
Sbjct: 157 EVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDA-----QSAINDLTGK 211
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLF+GGIS++T+E L + FS YG VL+ ++ ++ +G+ +GFGFV ++ ++
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYN---TVEEASSA 101
Query: 67 KHVIDGRTVDAKR 79
+DG+ + +R
Sbjct: 102 IQALDGQDLYGRR 114
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLH 171
K+FVGG+ E+ F YG V D ++ D+ +GR +GFGF++++ E+A +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 172 KSFHDLNGKQVEVKRA--LPKD 191
DL G++V V A P+D
Sbjct: 105 LDGQDLYGRRVGVNFANERPRD 126
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLF+GGIS++T+E L + FS YG VL+ ++ ++ +G+ +GFGFV ++ ++
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYN---TVEEASSA 101
Query: 67 KHVIDGRTVDAKR 79
+DG+ + +R
Sbjct: 102 IQALDGQDLYGRR 114
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLH 171
K+FVGG+ E+ F YG V D ++ D+ +GR +GFGF++++ E+A +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 172 KSFHDLNGKQVEVKRA--LPKD 191
DL G++V V A P+D
Sbjct: 105 LDGQDLYGRRVGVNFANERPRD 126
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
KLFIGG+S++ ++ L++ F+ YGDV+ V+ ++ TG+ RGFGFV F S+ + A+
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 66 DKHVI 70
D V+
Sbjct: 97 DGQVV 101
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ K+F+GGL + ++ R F +YG V + V+ D+ TGR RGFGF++F +E++ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+LF+G + + + +L + F G+V++ ++ + T + RGF FV + V DA E
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN--VEDAE-EA 165
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
+ DG TV RA ++ + + KI+ G L +T +
Sbjct: 166 IRMFDGTTVGG-RAIKVNFPEVPIVGKRVQMGSTYRGYVDS---PHKIYAGNLGWDMTSQ 221
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
R+ F + V+Y++N G+ RG+GF+SF+ + V+ L +NG +V+
Sbjct: 222 YLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA----MNGVEVQ 274
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 110 RTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDR 168
+++++FVG LP +L+ + Q F G+V V ++YD T R RGF F++ N EDA +
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 169 V 169
+
Sbjct: 166 I 166
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+LF+G + + + +L + F G+V++ ++ + T + RGF FV + V DA E
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN--VEDAE-EA 165
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
+ DG TV RA ++ + + KI+ G L +T +
Sbjct: 166 IRMFDGTTVGG-RAIKVNFPEVPIVGKRVQMGSTYRGYVDS---PHKIYAGNLGWDMTSQ 221
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
R+ F + V+Y++N G+ RG+GF+SF+ + V+ L +NG +V+
Sbjct: 222 YLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA----MNGVEVQ 274
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 110 RTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDR 168
+++++FVG LP +L+ + Q F G+V V ++YD T R RGF F++ N EDA +
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 169 V 169
+
Sbjct: 166 I 166
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 11/81 (13%)
Query: 7 KLFIGGI--------SWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA 58
KLFIGGI S+ T+E+ L+E FS YG+VL+ ++ ++ TG+ RGFGF+ F+
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 59 VLDAVLEDKHVIDGRTVDAKR 79
+ ++ +DG+ + +R
Sbjct: 103 EASSAIQ---ALDGQDLHGRR 120
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 111 TKKIFVGGLPP--------TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN 162
T K+F+GG+ + E R+ F YG V D ++ D+ TGR RGFGFI+F++
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 163 -EDAVDRVLHKSFHDLNGKQVEVKRA 187
E+A + DL+G++V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHF-SNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
DS +F+G ++ D ++ L E F + Y V V+ ++ TG+ +G+GFV F+D +
Sbjct: 163 DSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQ 222
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ + + T + + + TS+A IFVG L
Sbjct: 223 MRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLD 282
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRG--FGFISFDNEDAVD---RVLHKSFH 175
P +T+E +Q F YG + V + P G GF+ F + + + RVL+ +
Sbjct: 283 PNVTDEHLKQVFTQYGELVHVKI--------PSGKRCGFVQFADRSSAEEALRVLNGTL- 333
Query: 176 DLNGKQVEV 184
L G+ V +
Sbjct: 334 -LGGQNVRL 341
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 37/179 (20%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++G I + + L E F + G + ++R++ + +GFV + D A +
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 68 H--VIDGRTVDAKRAF---SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPT 122
H + G+ + A+ SRED +FVG L P
Sbjct: 118 HGRQLYGQALKVNWAYANSSREDTSGHF----------------------NVFVGDLSPE 155
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGK 180
+T+ F Y +D VM+D TGR +G+GF+SF D++DA + +D+ GK
Sbjct: 156 VTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDA-----QSAINDMTGK 209
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 37/179 (20%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++G I + + L E F + G + ++R++ + +GFV + D A +
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 68 H--VIDGRTVDAKRAF---SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPT 122
H + G+ + A+ SRED +FVG L P
Sbjct: 118 HGRQLYGQALKVNWAYANSSREDTSGHF----------------------NVFVGDLSPE 155
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGK 180
+T+ F Y +D VM+D TGR +G+GF+SF D++DA + +D+ GK
Sbjct: 156 VTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDA-----QSAINDMTGK 209
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 37/179 (20%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++G I + + L E F + G + ++R++ + +GFV + D A +
Sbjct: 46 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 101
Query: 68 H--VIDGRTVDAKRAF---SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPT 122
H + G+ + A+ SRED +FVG L P
Sbjct: 102 HGRQLYGQALKVNWAYANSSREDTSGHF----------------------NVFVGDLSPE 139
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGK 180
+T+ F Y +D VM+D TGR +G+GF+SF D++DA + +D+ GK
Sbjct: 140 VTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDA-----QSAINDMTGK 193
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 28/190 (14%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S G +FI + + L + F+ +G VL+ V + N G+ +G+GFV F + +
Sbjct: 115 SGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGN-GQSKGYGFVQFDNEEAAKS 173
Query: 63 VLEDKHVIDGRTVDAKRA----FSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
++ +DG ++ K+ F R ++ + ++V
Sbjct: 174 AIKQ---LDGMLINDKQVYVGFFVRHQERARTNGSP---------------KFTNVYVKN 215
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLN 178
+ T+E +Q F +G +T VM D N G+ R FGF++F + D+ + K LN
Sbjct: 216 ISEASTDEDLKQLFGPFGMITSATVMKDAN-GKSRCFGFVNFQSPDSAAAAVEK----LN 270
Query: 179 GKQVEVKRAL 188
G + + L
Sbjct: 271 GTAINDDKVL 280
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 28/190 (14%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S G +FI + + L + F+ +G VL+ V + N G+ +G+GFV F + +
Sbjct: 115 SGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGN-GQSKGYGFVQFDNEEAAKS 173
Query: 63 VLEDKHVIDGRTVDAKRA----FSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
++ +DG ++ K+ F R ++ + ++V
Sbjct: 174 AIKQ---LDGMLINDKQVYVGFFVRHQERARTNGSP---------------KFTNVYVKN 215
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLN 178
+ T+E +Q F +G +T VM D N G+ R FGF++F + D+ + K LN
Sbjct: 216 ISEASTDEDLKQLFGPFGMITSATVMKDAN-GKSRCFGFVNFQSPDSAAAAVEK----LN 270
Query: 179 GKQVEVKRAL 188
G + + L
Sbjct: 271 GTAINDDKVL 280
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F + E + E FS G V + ++ ++N+ + +G G++ F D +V
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ ++ G+ V K + + ++ S T+ +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVD-----RKLYVGNLH 325
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
+TE + R+ FE +G V V + D TG +GFGFI F + + K+ LNGK
Sbjct: 326 FNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGK 380
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F + E + E FS G V + ++ ++N+ + +G G++ F D +V
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ ++ G+ V K + + ++ S T+ +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVD-----RKLYVGNLH 325
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH-KSFHDLNG 179
+TE + R+ FE +G V V + D TG +GFGFI F + + H K+ LNG
Sbjct: 326 FNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH------IEHAKAAQSLNG 379
Query: 180 K 180
K
Sbjct: 380 K 380
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F + E + E FS G V + ++ ++N+ + +G G++ F D +V
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ ++ G+ V K + + ++ S T+ +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVD-----RKLYVGNLH 325
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH-KSFHDLNG 179
+TE + R+ FE +G V V + D TG +GFGFI F + + H K+ LNG
Sbjct: 326 FNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH------IEHAKAAQSLNG 379
Query: 180 K 180
K
Sbjct: 380 K 380
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F + E + E FS G V + ++ ++N+ + +G G++ F D +V
Sbjct: 198 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 257
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ ++ G+ V K + E ++ V S A +K++VG L
Sbjct: 258 MAIALSGQLLLGQPVMVKPS---EAEKNLVQSNASSGAAVVGPYGAVD---RKLYVGNLH 311
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
+TE R+ FE +G + V + D TG +GFGF+ F + + K+ LNGK
Sbjct: 312 FNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-----KAAQSLNGK 366
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 8 LFIGGISWDTNEDKLKEHF-SNYGDVLNTSVMREKNTGKPRGFGFVVFSDPA-VLDAVLE 65
+F+G ++ D + L+E F + Y V V+ ++ TG+ +G+GFV F+D + A+ E
Sbjct: 157 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTE 216
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ V+ + R ++ + T++ IFVG L P +T+
Sbjct: 217 MQGVLC--STRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTD 274
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRG--FGFISFDNEDAVD---RVLHKSFHDLNGK 180
+ RQ F YG + V + P G GF+ F + + RVL+ + L G+
Sbjct: 275 DHLRQVFTQYGELVHVKI--------PSGKRCGFVQFSDRSCAEEAIRVLNGTL--LGGQ 324
Query: 181 QVEV 184
V +
Sbjct: 325 NVRL 328
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMREKN-TGKPRGFGFVVFSDPA-V 59
D L++G I ++ LKE +YG +V + +++ + N G RGF F+ FS +
Sbjct: 292 DSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 351
Query: 60 LDAV--LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
+DA L+ + V G AK +F+ D I + K +F+
Sbjct: 352 MDAFKRLQKRDVTFGVDKPAKVSFA--DSFIDPGDEIMS-------------QVKTVFID 396
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
LPP+ E+ R + YG V + + + R + +GF++F + DA R
Sbjct: 397 ALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRC 448
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++FVGGL TE+ R+ F G VT+V +M + T + +GF F+ F+N + R + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 173 SFHD-LNGKQVEV 184
+ +NGKQ V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMREKN-TGKPRGFGFVVFSDPA-V 59
D L++G I ++ LKE +YG +V + +++ + N G RGF F+ FS +
Sbjct: 292 DSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 351
Query: 60 LDAV--LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
+DA L+ + V G AK +F+ D I + K +F+
Sbjct: 352 MDAFKRLQKRDVTFGVDKPAKVSFA--DSFIDPGDEIMS-------------QVKTVFID 396
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
LPP+ E+ R + YG V + + + R + +GF++F + DA R
Sbjct: 397 ALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRC 448
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++FVGGL TE+ R+ F G VT+V +M + T + +GF F+ F+N + R + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 173 SFHD-LNGKQVEV 184
+ +NGKQ V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMREKN-TGKPRGFGFVVFSDPA-V 59
D L++G I ++ LKE +YG +V + +++ + N G RGF F+ FS +
Sbjct: 293 DSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 352
Query: 60 LDAV--LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
+DA L+ + V G AK +F+ D I + K +F+
Sbjct: 353 MDAFKRLQKRDVTFGVDKPAKVSFA--DSFIDPGDEIMS-------------QVKTVFID 397
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
LPP+ E+ R + YG V + + + R + +GF++F + DA R
Sbjct: 398 ALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRC 449
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++FVGGL TE+ R+ F G VT+V +M + T + +GF F+ F+N + R + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 173 SFHD-LNGKQVEV 184
+ +NGKQ V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMREKN-TGKPRGFGFVVFSDPA-V 59
D L++G I ++ LKE +YG +V + +++ + N G RGF F+ FS +
Sbjct: 293 DSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 352
Query: 60 LDAV--LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
+DA L+ + V G AK +F+ D I + K +F+
Sbjct: 353 MDAFKRLQKRDVTFGVDKPAKVSFA--DSFIDPGDEIMS-------------QVKTVFID 397
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
LPP+ E+ R + YG V + + + R + +GF++F + DA R
Sbjct: 398 ALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRC 449
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++FVGGL TE+ R+ F G VT+V +M + T + +GF F+ F+N + R + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 173 SFHD-LNGKQVEV 184
+ +NGKQ V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g089990.1 | polyadenylate-binding protein II | HC |
chr8:37630582-37636333 | 20130731
Length = 216
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ +FVG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F +AV L
Sbjct: 87 ARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVETEAVQEAL 145
Query: 171 HKSFHDLNGKQVEVKRALPKDAN 193
S +L+G+Q++V LPK N
Sbjct: 146 LLSESELHGRQLKV---LPKRTN 165
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFI G+S++TNE L++ F +G ++ V+ TG+ +G+GFV F+ ++
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 67 KH--VIDGRTV 75
H ++DGR +
Sbjct: 94 LHGQIVDGRRI 104
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D G+L++G + + +L + F+ G V++ ++ ++ T + RGF FV +
Sbjct: 107 DAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSA---EEA 163
Query: 64 LEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
E + DG V + A + R KI+ G L +
Sbjct: 164 KEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGM 223
Query: 124 TEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVE 183
+ R F+ + ++Y+++ GR RGFGF++F+ + ++ L+ +NG +V+
Sbjct: 224 NSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA----MNGVEVQ 279
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVD---RV 169
K+FVG +P T TEE R FE +G+V +V ++ D+ TG+ +G FI + + D R
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 170 LHKSFHDLNG 179
LH H L G
Sbjct: 149 LHNR-HTLPG 157
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FV L T+++ F +G +T+ ++ DQNT RP+GFGF+S+ +E + K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAE----K 63
Query: 173 SFHDLNGKQVE-----VKRALPKDAN 193
+ LNG+ V+ V+ A PKD++
Sbjct: 64 ARKALNGRIVDGRLIFVEHAKPKDSS 89
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS--DPAVLDAVL 64
KLF+GG+S+ T E L + FSNYG V+ V+ ++ + K +G+GFV F+ D A
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 65 EDKHVIDGRTV 75
++ ++GR V
Sbjct: 93 MNEKALNGRVV 103
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V+TKK+FV GL +E+ R FE +G + +V V+ D+ + R +G+ FI + E+A
Sbjct: 189 VKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASA 248
Query: 169 VLHKSFHDLNGKQV 182
L ++NGK +
Sbjct: 249 AL----KEMNGKII 258
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++G + + N+ +L + FS V++ V R++ T G+G+V +S+ +E+
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+ + + FS D I T A +F+ L ++ +
Sbjct: 87 NYVPLNGKPIRIMFSHRDPLIRKTGFA------------------NLFIKNLETSIDNKA 128
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+ F +G+V V D N G +G GF+ FDN+ + + K
Sbjct: 129 LHETFSVFGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEK 172
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMRE-KNTGKPRGFGFVVFSDPAV 59
D LF+G I ++ +K+ +YG V N +++ + ++ G RGF F+ FS A
Sbjct: 495 EDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHA- 553
Query: 60 LDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
DA+L K + + F ++ T++ + K +F+ GL
Sbjct: 554 -DAMLAYKRLQKPGVI-----FGHAER----TAKVAFAEPIREPDPEIMAQVKSVFINGL 603
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV 166
P E+ R++ +SYG + +V+ +T + + GF+ F +A
Sbjct: 604 PLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAA 650
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMRE-KNTGKPRGFGFVVFSDPAV 59
D LF+G I ++ +K+ +YG V N +++ + ++ G RGF F+ FS A
Sbjct: 495 EDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHA- 553
Query: 60 LDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
DA+L K + + F ++ T++ + K +F+ GL
Sbjct: 554 -DAMLAYKRLQKPGVI-----FGHAER----TAKVAFAEPIREPDPEIMAQVKSVFINGL 603
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV 166
P E+ R++ +SYG + +V+ +T + + GF+ F +A
Sbjct: 604 PLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAA 650
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYG--DVLNTSVMRE-KNTGKPRGFGFVVFSDPAV 59
D LF+G I ++ +K+ +YG V N +++ + ++ G RGF F+ FS A
Sbjct: 495 EDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHA- 553
Query: 60 LDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
DA+L K + + F ++ T++ + K +F+ GL
Sbjct: 554 -DAMLAYKRLQKPGVI-----FGHAER----TAKVAFAEPIREPDPEIMAQVKSVFINGL 603
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV 166
P E+ R++ +SYG + +V+ +T + + GF+ F +A
Sbjct: 604 PLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAA 650
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K++VGG+P +E+ YFE G +T++ M +TG+ RG ISF E A R L
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALAL 280
Query: 173 SFHDLNG 179
D+ G
Sbjct: 281 DGADMGG 287
>Medtr1g073000.3 | polyadenylate-binding protein II | HC |
chr1:32414624-32417752 | 20130731
Length = 187
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V + I+VG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F DAV
Sbjct: 91 VDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEADAVQN 149
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 150 ALILNETELHGRQLKV 165
>Medtr1g073000.1 | polyadenylate-binding protein II | HC |
chr1:32414615-32419459 | 20130731
Length = 187
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V + I+VG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F DAV
Sbjct: 91 VDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEADAVQN 149
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 150 ALILNETELHGRQLKV 165
>Medtr1g073000.2 | polyadenylate-binding protein II | HC |
chr1:32414624-32419295 | 20130731
Length = 187
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V + I+VG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F DAV
Sbjct: 91 VDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEADAVQN 149
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 150 ALILNETELHGRQLKV 165
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGD-VLNTSVMRE-KNTGKPRGFGFVVFSDPAVLDAVL 64
+LFIG I ED+ ++ G V + ++++ +N + RGF FV++ + A D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 65 EDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLT 124
+ + + + D + S A + K ++V +P +T
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAAS------------QVKALYVKNIPENVT 292
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGKQVE 183
E+ ++ F +G VT VV+ + +G+ R FGFI + + A+ V ++++G+ +E
Sbjct: 293 TEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALE 351
Query: 184 VKRALPK 190
V A P+
Sbjct: 352 VVIAKPQ 358
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGD-VLNTSVMRE-KNTGKPRGFGFVVFSDPAVLDAVL 64
+LFIG I ED+ ++ G V + ++++ +N + RGF FV++ + A D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 65 EDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLT 124
+ + + + D + S A + K ++V +P +T
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAAS------------QVKALYVKNIPENVT 292
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGKQVE 183
E+ ++ F +G VT VV+ + +G+ R FGFI + + A+ V ++++G+ +E
Sbjct: 293 TEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALE 351
Query: 184 VKRALPK 190
V A P+
Sbjct: 352 VVIAKPQ 358
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGD-VLNTSVMRE-KNTGKPRGFGFVVFSDPAVLDAVL 64
+LFIG I ED+ ++ G V + ++++ +N + RGF FV++ + A D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 65 EDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLT 124
+ + + + D + S A + K ++V +P +T
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAAS------------QVKALYVKNIPENVT 292
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNGKQVE 183
E+ ++ F +G VT VV+ + +G+ R FGFI + + A+ V ++++G+ +E
Sbjct: 293 TEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALE 351
Query: 184 VKRALPK 190
V A P+
Sbjct: 352 VVIAKPQ 358
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD---AV 63
++F+GG+ + E +++E +G + + ++R+K TG +G+GF ++ DPAV D A
Sbjct: 179 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 238
Query: 64 LEDKHVIDGRTVDAKRA-------------FSREDQQISVTSRA 94
L + D +T+ +RA F+R Q I++ A
Sbjct: 239 LNGLKMGD-KTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIA 281
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSV-MREKNTGKPRGFGFVVFSDPAVLDAVLE 65
+L + W + + ++ F YG VL+ + M KN + RG FV P L
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKN--RNRGLAFVEMGSPEEASEALN 147
Query: 66 --DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
+ DGR ++ + A ++++ R T +FV P
Sbjct: 148 SLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI--------------TYNLFVANFPYEA 193
Query: 124 TEEKFRQYFES-YGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ +++F+S G V V++ +N RP G+GF+S+ ++ D L
Sbjct: 194 RSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSV-MREKNTGKPRGFGFVVFSDPAVLDAVLE 65
+L + W + + ++ F YG VL+ + M KN + RG FV P L
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKN--RNRGLAFVEMGSPEEASEALN 147
Query: 66 --DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTL 123
+ DGR ++ + A ++++ R T +FV P
Sbjct: 148 SLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI--------------TYNLFVANFPYEA 193
Query: 124 TEEKFRQYFES-YGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ +++F+S G V V++ +N RP G+GF+S+ ++ D L
Sbjct: 194 RSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD---AV 63
++F+GG+ + E +++E +G + + ++R+K TG +G+GF ++ DPAV D A
Sbjct: 299 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 358
Query: 64 LEDKHVIDGRTVDAKRA-------------FSREDQQISVTSRA 94
L + D +T+ +RA F+R Q I++ A
Sbjct: 359 LNGLKMGD-KTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIA 401
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 8 LFIGGISWDTNEDKLKEHFSNY---GDVLNTSVMREKNTGK--PRGFGFVVFSDPAVLDA 62
LF+ +++ T ++ L+EHFS + G +L+ V + GK GFGFV F +
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATS 702
Query: 63 VLEDKH--VIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
V D V+DG + + + D V + + K+ V +
Sbjct: 703 VCNDLQGTVLDGHALILQLCHVKNDDD-KVQKKVEKDKS-----------STKLLVKNVA 750
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNG 179
TE+ RQ F +G + + + G RGF F+ + ++A + + S L G
Sbjct: 751 FEATEKDLRQLFSPFGQIKSLRL--PMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYG 808
Query: 180 KQVEVKRA 187
+ + ++RA
Sbjct: 809 RHLVIERA 816
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++FV LP + TEE+ ++F +G V+ ++ D++T R +G +I F + R L +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 173 SFHDL-NGKQVEVKRALPKDAN 193
S + + G+ + V A+P+ +N
Sbjct: 390 SDNSIFQGRLLHVMPAIPRHSN 411
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S+ +LF+ + + T E++L+EHFS +G V ++ +K+T + +G ++ FS P
Sbjct: 326 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAAR 385
Query: 63 VLE--DKHVIDGRTVDAKRAFSR 83
LE D + GR + A R
Sbjct: 386 ALEESDNSIFQGRLLHVMPAIPR 408
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 17/100 (17%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD---AV 63
++F+GG+ + E +++E +G + + ++R+K TG +G+GF ++ DPAV D A
Sbjct: 284 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 343
Query: 64 LEDKHVIDGRTVDAKRA-------------FSREDQQISV 90
L + D +T+ +RA F+R Q I++
Sbjct: 344 LNGLKMGD-KTLTVRRATVSAHSKPEEDNIFARAQQHIAM 382
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 114 IFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKS 173
+FVGG+P TE F YG V D+ ++ D+ TG+ +GF FI+++++ R + +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQ----RSTNLA 93
Query: 174 FHDLNGKQV 182
+LNG QV
Sbjct: 94 VDNLNGAQV 102
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVL 170
+ +FVG +P TEE+ ++ G V ++ D+ TG+P+G+GF + D E A+
Sbjct: 29 RTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARR 88
Query: 171 HKSFHDLNGKQVEV 184
+ +++NG+Q+ V
Sbjct: 89 NLQGYEINGRQLRV 102
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD---AV 63
++F+GG+ + E +++E +G + + ++R+K TG +G+GF ++ DPAV D A
Sbjct: 136 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 195
Query: 64 LEDKHVIDGRTVDAKRA-------------FSREDQQISVTSRA 94
L + D +T+ +RA F+R Q I++ A
Sbjct: 196 LNGLKMGD-KTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIA 238
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D +LF G + + N+D L + F+ + V+R+K TGK +G+GF+ F++PA L A
Sbjct: 130 DDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 64 LEDKH--VIDGRTVDAKRAFSRE 84
L++ + + R + +++ RE
Sbjct: 190 LKEMNGKYVGNRPIKLRKSKWRE 212
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV--- 169
+++V GL TEE R F+++G + DV ++ D+ RPRGF F+ + E+ +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 170 LHKSFHDLNGKQVEVKRALPKD 191
+H F L+G+ + V+ A P+
Sbjct: 156 MHGKF--LDGRVIFVEVAKPRS 175
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+L++ G+S+ T E+ L+ F N+G +++ +++ +K +PRGF F+ ++ +E
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 67 KH--VIDGRTVDAKRAFSRED 85
H +DGR + + A R +
Sbjct: 156 MHGKFLDGRVIFVEVAKPRSE 176