Miyakogusa Predicted Gene
- Lj0g3v0310189.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0310189.1 Non Characterized Hit- tr|I1KHA8|I1KHA8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.05,0,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; PORR,Plant organelle RNA
recognition domain; seg,NU,CUFF.20935.1
(388 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 142 5e-34
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 139 7e-33
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 137 2e-32
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 126 4e-29
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 124 2e-28
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 124 2e-28
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 122 6e-28
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 122 6e-28
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 121 1e-27
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 121 1e-27
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 120 2e-27
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 120 3e-27
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 120 3e-27
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 120 3e-27
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 120 3e-27
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 120 3e-27
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 119 4e-27
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 115 7e-26
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 113 3e-25
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 112 6e-25
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 108 8e-24
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 108 8e-24
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 105 7e-23
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 100 4e-21
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 99 1e-20
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 92 1e-18
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 85 1e-16
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 81 2e-15
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 78 2e-14
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 74 2e-13
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 70 4e-12
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 131/241 (54%), Gaps = 17/241 (7%)
Query: 139 KLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRR--VRGRDFLHLEDWD 196
+LLM+ VD RV L+ + + GLP DF + KYPQ F + + + +FL L W+
Sbjct: 143 RLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWN 202
Query: 197 SSLAVTAREAR--LAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF-RPNVGY 253
S A+T E + + EGV T+ G PF K FPA F R + Y
Sbjct: 203 SEWAITEIEKKNKMILEGVTETEHTP----------GLLSLPFPLK--FPANFKRVHSYY 250
Query: 254 LQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSE 313
++++ +Q+ + SPY +A+ + KRAVAV+HELLS T+EKRL + L F E
Sbjct: 251 GEKIKMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWE 310
Query: 314 CFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGRR 373
+P +L+ L+KH GIFY++ +G R +V L + Y GS LI+K PL + K ++L G R
Sbjct: 311 LVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYEGSELIEKSPLFLWREKLLSLVGYR 370
Query: 374 N 374
Sbjct: 371 G 371
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 177/369 (47%), Gaps = 35/369 (9%)
Query: 20 GCIRHKSSGGRRPKKKTYHRVPELDRVMELRKKPLMILQLKTLIQSQPRNS-PLF-LRDL 77
IR S PKK+ R D ME+ KK +L+ + LI S+P S P+ L
Sbjct: 31 SSIREFSQSTSIPKKQQRIRDHGYDNYMEIEKKTRKVLKFQNLILSEPNQSIPISRLETQ 90
Query: 78 EKNVGFVRKWDFMALIERHPTIFRVAGAPPS----VSLTDKXXXXXXXXXXXXXLMEPVL 133
+GF R + +A I + +F + P LT K
Sbjct: 91 AHRIGFTRH-EAIAFILKFLHVFEIFEHPVQRILFCRLTRKAILQIEQERLALADQVERA 149
Query: 134 VTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAI---RRVRGRDFL 190
VT LRK++M+ R+ LE + + + LGLP DFE ++ +YP+FF + + R + ++
Sbjct: 150 VTRLRKMIMMSNGLRLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETRNK-YI 208
Query: 191 HLEDWDSSLAVTAREARLAQEGVLNTKPNQ--DQRKVKISRDGNYVGPFAFKVNFPAGFR 248
L ++D LA A E A+E V + ++ D R F+F ++FP GF+
Sbjct: 209 ELVEFDPKLAKCAIED--ARERVYRERGSEAEDIR-------------FSFLIDFPPGFK 253
Query: 249 PNVGYLQQLERWQKLEFPSPYLNARRFDV----ADPKSRKRAVAVIHELLSLTMEKRLTS 304
+ + + +WQ+L + SPY + +D+ A + KRAVA IHELLSLT+EK++T
Sbjct: 254 ISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITL 313
Query: 305 SQLDAFHSECFLPSQLLLCLIKHQGIFYLT---NKGVRSTVLLKDTYLGSNLIDKCPLLE 361
++ F LP +L L++HQGIFY++ N G TV L++ Y L++ L
Sbjct: 314 ERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYSKGELVEPNDLYL 373
Query: 362 FNNKFVALC 370
K V L
Sbjct: 374 ARRKLVELV 382
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 164/334 (49%), Gaps = 16/334 (4%)
Query: 43 LDRVMELRKKPLMILQLKTLIQSQPRNSPLFLRDLEK---NVGFVRKWDFMALIERHPTI 99
D V++ KK +L+++ ++ S+P + L++L K +G +K + ++ R P +
Sbjct: 92 FDNVIQKDKKLKFVLKVRKILVSKP-TRVMSLQELGKYRRELGLDKKRKLIVILRRFPGV 150
Query: 100 FRVAGA---PPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLETLEL 156
F + +T + ME V+VT LRKLLM+ ++ R+ LE +
Sbjct: 151 FEIVEDGCYSLKFKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLEKIGH 210
Query: 157 VGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTAREARLAQEGVLNT 216
+ +LGLP +F + + +YP+FF + + L L WD LAV+A E A+E +
Sbjct: 211 LANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPHLAVSAAELS-AEENRIRE 269
Query: 217 KPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLEFPSPYLNARRFD 276
Q+ + I R P +V P G + G ++++ +++ + + SPY +
Sbjct: 270 VEEQN---LIIDR-----APKFNRVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMIG 321
Query: 277 VADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKHQGIFYLTNK 336
+ P+ K A VIHE+LSLT+EKR F E QL LI+H +FY++ K
Sbjct: 322 LNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLK 381
Query: 337 GVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALC 370
G R +V L++ Y S L+DK LL K +L
Sbjct: 382 GDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLV 415
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 160/345 (46%), Gaps = 25/345 (7%)
Query: 39 RVPELDRVMELRKKPLMILQLKTLIQSQPRNSPLFLRDLE--KNVGFVRKWDFMALIERH 96
R D++ KK ++L+ + LI ++ R S + L+ + KN+ + + ++++
Sbjct: 48 RDTHFDKLTTHFKKLSLVLKTRNLISNRKRGSFVSLQLMSRWKNITGLNV-TVTSFLQKY 106
Query: 97 PTIFRVAGAP----PSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
P +F + P +T K E +V ++KLLM+ V+ + L
Sbjct: 107 PHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMSVNGTLHLH 166
Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTAREARLAQEG 212
L L+ ELGLP DF E ++ +Y F R+ + + L WD L + E +E
Sbjct: 167 ALRLIRRELGLPCDFRESILGRYSDEF---RLVDLEIVALVGWDDELGMARVEEWREREY 223
Query: 213 VLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLEFPSPYLNA 272
+ + FAF +NFP GF+ G+ ++L+ WQ+L + PY
Sbjct: 224 REKWLSEFETK-------------FAFPINFPTGFKIERGFREKLKGWQRLSYTKPYERK 270
Query: 273 RRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKHQGIFY 332
+ KRAVAV+HELLSLT+EK + QL F + + + L++H GIFY
Sbjct: 271 NVKCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPGIFY 330
Query: 333 LTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALC--GRRNT 375
++ KG TV L++ Y LI+ P+ E + L GRR T
Sbjct: 331 ISTKGNAQTVFLREAYEKGGLIEPNPVYEVRRNMLELVLLGRRKT 375
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 119/242 (49%), Gaps = 18/242 (7%)
Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRV--RGR 187
EP++V+ L KLLM+ D V + L V E G P+DF L+ +YP++F + + G+
Sbjct: 136 EPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 188 DFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF 247
FL L +W+ A + E R +E S G V P +F V P GF
Sbjct: 196 SFLELVNWNPEFAKSVVEKRAEEES---------------SATGIRVRP-SFNVKLPPGF 239
Query: 248 RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQL 307
+ + W +L++ SPY + F+ + + KR+V V HELLSL++ KR+ L
Sbjct: 240 VLKKEMREWIRDWMELDYVSPYEDVSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPIL 299
Query: 308 DAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFV 367
F E + +H GIFYL+ KG T +L++ Y G LI PLL+ ++F
Sbjct: 300 GKFCDEYRFSNAFSSAFTRHSGIFYLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFA 359
Query: 368 AL 369
L
Sbjct: 360 EL 361
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 119/242 (49%), Gaps = 18/242 (7%)
Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRV--RGR 187
EP++V+ L KLLM+ D V + L V E G P+DF L+ +YP++F + + G+
Sbjct: 136 EPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 188 DFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF 247
FL L +W+ A + E R +E S G V P +F V P GF
Sbjct: 196 SFLELVNWNPEFAKSVVEKRAEEES---------------SATGIRVRP-SFNVKLPPGF 239
Query: 248 RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQL 307
+ + W +L++ SPY + F+ + + KR+V V HELLSL++ KR+ L
Sbjct: 240 VLKKEMREWIRDWMELDYVSPYEDVSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPIL 299
Query: 308 DAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFV 367
F E + +H GIFYL+ KG T +L++ Y G LI PLL+ ++F
Sbjct: 300 GKFCDEYRFSNAFSSAFTRHSGIFYLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFA 359
Query: 368 AL 369
L
Sbjct: 360 EL 361
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 139 KLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRG-RDFLHLEDWDS 197
KLLML D +PL+T++ + +LGLP D+++ + +P+ F+ R+ R L L WD
Sbjct: 148 KLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGLKLLFWDD 207
Query: 198 SLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQL 257
LAV+ E N Q +K G AF V+F GF ++ L
Sbjct: 208 KLAVSELEK--------NASLQQQVEDIK-------NGTLAFPVSFTRGFGMKRKSMEWL 252
Query: 258 ERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLP 317
WQKL + SPY +A D+ S KR V V HELL LT+ K+ + LP
Sbjct: 253 REWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALP 312
Query: 318 SQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGR 372
+ +H GIFY++ K TV+L++ Y G L+ K PL++ + L +
Sbjct: 313 QKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKK 367
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 139 KLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRG-RDFLHLEDWDS 197
KLLML D +PL+T++ + +LGLP D+++ + +P+ F+ R+ R L L WD
Sbjct: 148 KLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGLKLLFWDD 207
Query: 198 SLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQL 257
LAV+ E N Q +K G AF V+F GF ++ L
Sbjct: 208 KLAVSELEK--------NASLQQQVEDIK-------NGTLAFPVSFTRGFGMKRKSMEWL 252
Query: 258 ERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLP 317
WQKL + SPY +A D+ S KR V V HELL LT+ K+ + LP
Sbjct: 253 REWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALP 312
Query: 318 SQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGR 372
+ +H GIFY++ K TV+L++ Y G L+ K PL++ + L +
Sbjct: 313 QKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKK 367
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 18/242 (7%)
Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRV--RGR 187
EP++V+ L KLLM+ D V + L V E G P+DF L+ +YP++F + + G+
Sbjct: 136 EPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 188 DFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF 247
FL L +W+ A + E R +E G V P +F V P GF
Sbjct: 196 SFLELVNWNPEFAKSVIERRAEEES---------------RATGIRVRP-SFNVKLPPGF 239
Query: 248 RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQL 307
+ + W +L++ SPY + + A + KR+V V HELLSL++ KR+ L
Sbjct: 240 VLKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPIL 299
Query: 308 DAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFV 367
F E + +H GIFY++ KG T +L++ Y G LID PLL+ ++F
Sbjct: 300 GKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFA 359
Query: 368 AL 369
L
Sbjct: 360 EL 361
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 18/242 (7%)
Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRV--RGR 187
EP++V+ L KLLM+ D V + L V E G P+DF L+ +YP++F + + G+
Sbjct: 136 EPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 188 DFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF 247
FL L +W+ A + E R +E G V P +F V P GF
Sbjct: 196 SFLELVNWNPEFAKSVIERRAEEES---------------RATGIRVRP-SFNVKLPPGF 239
Query: 248 RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQL 307
+ + W +L++ SPY + + A + KR+V V HELLSL++ KR+ L
Sbjct: 240 VLKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPIL 299
Query: 308 DAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFV 367
F E + +H GIFY++ KG T +L++ Y G LID PLL+ ++F
Sbjct: 300 GKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFA 359
Query: 368 AL 369
L
Sbjct: 360 EL 361
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 136/280 (48%), Gaps = 36/280 (12%)
Query: 93 IERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
I ++P+ F+ V LT + +E V V L KLLML ++ + +
Sbjct: 83 ISKYPSCFQFH--QDHVLLTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLNNCLNVM 140
Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREARLA 209
+ + GLP D+ ++AKY F IR GR + L W+ AV+ EA
Sbjct: 141 KINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEALAM 200
Query: 210 QEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE---FP 266
+ GV +VNF P+ +++ LE++++ E +
Sbjct: 201 KNGV--------------------------EVNFSCCL-PS-SWVKSLEKFREFELVPYV 232
Query: 267 SPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIK 326
SPY + RR + KR + ++HELLSLT+ K+++ +L F E FLP ++ + L+K
Sbjct: 233 SPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLK 292
Query: 327 HQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
H GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 293 HHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPLVAVKEKF 332
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 90 MALIERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRV 149
+ I ++P+ F+ V LT + +E V V L KLLML ++ +
Sbjct: 78 LNWISKYPSCFQFH--QDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 150 PLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREA 206
+ + + LG P D+ ++AKYP F IR GR + L W+ AV+ EA
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 207 RLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE-- 264
+ GV +VNF P+ +++ LE++ + E
Sbjct: 196 LAMKNGV--------------------------EVNFSCCL-PS-SWVKSLEKFHEFELV 227
Query: 265 -FPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
+ SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ +
Sbjct: 228 PYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVL 287
Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
L+KH GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 288 LLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 330
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 90 MALIERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRV 149
+ I ++P+ F+ V LT + +E V V L KLLML ++ +
Sbjct: 78 LNWISKYPSCFQFH--QDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 150 PLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREA 206
+ + + LG P D+ ++AKYP F IR GR + L W+ AV+ EA
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 207 RLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE-- 264
+ GV +VNF P+ +++ LE++ + E
Sbjct: 196 LAMKNGV--------------------------EVNFSCCL-PS-SWVKSLEKFHEFELV 227
Query: 265 -FPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
+ SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ +
Sbjct: 228 PYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVL 287
Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
L+KH GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 288 LLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 330
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 90 MALIERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRV 149
+ I ++P+ F+ V LT + +E V V L KLLML ++ +
Sbjct: 78 LNWISKYPSCFQFH--QDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 150 PLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREA 206
+ + + LG P D+ ++AKYP F IR GR + L W+ AV+ EA
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 207 RLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE-- 264
+ GV +VNF P+ +++ LE++ + E
Sbjct: 196 LAMKNGV--------------------------EVNFSCCL-PS-SWVKSLEKFHEFELV 227
Query: 265 -FPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
+ SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ +
Sbjct: 228 PYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVL 287
Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
L+KH GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 288 LLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 330
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 90 MALIERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRV 149
+ I ++P+ F+ V LT + +E V V L KLLML ++ +
Sbjct: 78 LNWISKYPSCFQFH--QDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 150 PLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREA 206
+ + + LG P D+ ++AKYP F IR GR + L W+ AV+ EA
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 207 RLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE-- 264
+ GV +VNF P+ +++ LE++ + E
Sbjct: 196 LAMKNGV--------------------------EVNFSCCL-PS-SWVKSLEKFHEFELV 227
Query: 265 -FPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
+ SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ +
Sbjct: 228 PYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVL 287
Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
L+KH GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 288 LLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 330
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 36/280 (12%)
Query: 93 IERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
I ++P+ F+ V LT + +E V V L KLLML ++ + +
Sbjct: 81 ISKYPSCFQFHQD--HVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVM 138
Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREARLA 209
+ + LG P D+ ++AKYP F IR GR + L W+ AV+ EA
Sbjct: 139 KINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEALAM 198
Query: 210 QEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE---FP 266
+ GV +VNF + +++ LE++++ E +
Sbjct: 199 KNGV--------------------------EVNFSCCLPSS--WVKSLEKFREFELVPYV 230
Query: 267 SPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIK 326
SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ + L+K
Sbjct: 231 SPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLK 290
Query: 327 HQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
H GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 291 HPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 330
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 135/280 (48%), Gaps = 36/280 (12%)
Query: 93 IERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
I ++P+ F+ V LT + +E V V L KLLML ++ + +
Sbjct: 81 ISKYPSCFQFHQD--HVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVM 138
Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREARLA 209
+ + LG P D+ ++AKYP F IR GR + L W+ AV+ EA
Sbjct: 139 KINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEALAM 198
Query: 210 QEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE---FP 266
+ GV +VNF + +++ LE++++ E +
Sbjct: 199 KNGV--------------------------EVNFSCCLPSS--WVKSLEKFREFELVPYV 230
Query: 267 SPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIK 326
SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ + L+K
Sbjct: 231 SPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLK 290
Query: 327 HQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
H GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 291 HPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 330
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 130/232 (56%), Gaps = 24/232 (10%)
Query: 134 VTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAI---RRVRGRDFL 190
VT LRK++M+ R+ LE + + + LGL DFE ++ +YP+FF + + R + ++
Sbjct: 115 VTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEYLVVLRYPEFFRLVDAKETRNK-YI 173
Query: 191 HLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPN 250
L ++D LA A E A+E V + ++ + ++ F+F ++F GF+ +
Sbjct: 174 ELVEFDPKLATCAIED--ARERVYRERGSEAE-DIR----------FSFLIDFLPGFKIS 220
Query: 251 VGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKR----AVAVIHELLSLTMEKRLTSSQ 306
+ + +WQ L + SPY + +D+ P+++KR AVA IHELLSLT+EK++T +
Sbjct: 221 KYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVATIHELLSLTVEKKITLER 280
Query: 307 LDAFHSECFLPSQLLLCLIKHQGIFYLT---NKGVRSTVLLKDTYLGSNLID 355
+ F LP +L L++HQGIFY++ N G TV L++ Y L++
Sbjct: 281 IAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRKGELVE 332
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 127/283 (44%), Gaps = 14/283 (4%)
Query: 90 MALIERHPTIFRVAGAP-----PSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLC 144
+ I R+PT+F P P LTD + E +V K+LM+
Sbjct: 85 LRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERFSKVLMMM 144
Query: 145 VDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFA-IRRVRGRDFLHLEDWDSSLAVTA 203
VP+++L + +LGLP FE+ LI KYP F ++ G + L DW AV+A
Sbjct: 145 KSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVSAIRLVDWCDEFAVSA 204
Query: 204 REARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKL 263
+ E + +D ++ K + F + FP G+ ++ +QKL
Sbjct: 205 LQKSNQCESENASDQYRDFKRGKTA--------LVFPMRFPRGYGGQKKVRFWMDEFQKL 256
Query: 264 EFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
+ SPY ++ + D KR V V+HE LSL + K+ + L + E LP +
Sbjct: 257 PYISPYADSSKIDPKSDLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPHKFTRI 316
Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
++ GIFYL+ K +TV L++ Y L+D PL +KF
Sbjct: 317 FTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLARHRDKF 359
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 133/280 (47%), Gaps = 36/280 (12%)
Query: 93 IERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
I ++P+ F+ V LT + +E V V L KLLM ++ + +
Sbjct: 38 ISKYPSCFQFH--QDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFSLNNCLNVM 95
Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREARLA 209
+ + LG P D+ ++ KYP F IR GR + L W+ +V+ A
Sbjct: 96 KINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNPDFSVSEVAALAM 155
Query: 210 QEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE---FP 266
+ GV +VNF P+ +++ LE++++ E +
Sbjct: 156 KNGV--------------------------EVNFSYCL-PS-SWVKSLEKFREFELVPYV 187
Query: 267 SPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIK 326
SPY + R + KR V ++HELLSLT+ K+++ +L F E FLP ++ + L+K
Sbjct: 188 SPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLK 247
Query: 327 HQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
H GIFY++NK TVLL++ Y+GS L+DK PL+ KF
Sbjct: 248 HPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKF 287
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 17/198 (8%)
Query: 139 KLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRR--VRGRDFLHLEDWD 196
+LLM+ VD RV L+ + + GLP DF + KYPQ F + + + +FL L W+
Sbjct: 150 RLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWN 209
Query: 197 SSLAVTAREAR--LAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF-RPNVGY 253
S A+T E + + EGV T+ G PF K FPA F R + Y
Sbjct: 210 SEWAITEIEKKNKMIMEGVTETEHT----------PGLLSLPFPLK--FPANFKRVHSYY 257
Query: 254 LQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSE 313
++++ +Q+ + SPY +A+ + KRAVAV+HELLS T+EKRL + L F E
Sbjct: 258 GEKIKMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWE 317
Query: 314 CFLPSQLLLCLIKHQGIF 331
+P +L+ L+KH GIF
Sbjct: 318 LVMPQKLMRLLLKHCGIF 335
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 170/400 (42%), Gaps = 34/400 (8%)
Query: 6 VSFLTA---KNPRATVVGCIRHKSSGGRRPKKKTYHRVPELDRVMELRKKPLMILQLKTL 62
V+FLT +N + + +R K++ + + R P +++M+ K L ++ + L
Sbjct: 20 VNFLTQHKHQNQQQPLCVFVRSKTTSIQYVNSRA--RDPTFEKLMDKYKNLLKVIAVHDL 77
Query: 63 IQSQPRNSPL---FLRDLEKNVGFVRKWDFMALIERHPTIFRVAGAP----PSVSLTDKX 115
I + P+N + FL +L + + R A + + P IF + P P LTD
Sbjct: 78 ILANPKNRSVSVDFLSNLSQRLHLNR--GATAFLRKFPHIFNIYYEPSKLQPFCRLTDAA 135
Query: 116 XXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKY 175
P++V L ++L + VPL + V ELGLP DFEE +IA
Sbjct: 136 LDVSRQEAEAINTSLPLVVERLVRILSMSASKTVPLRAVFKVWRELGLPDDFEESVIAAN 195
Query: 176 PQFFAIRRVRGRDFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVG 235
F + ++ HL + + A + +D R V+ +D + V
Sbjct: 196 SSVFQLCDADEQN-THLLKLVGDVPSSGFRAAV-----------EDWRVVECCKDESSVN 243
Query: 236 P----FAFKVNFPAGFRPNVGYLQQLERWQKLEFPSPYL----NARRFDVADPKSRKRAV 287
++FK +P G R + + ++ WQ L + PY + KRAV
Sbjct: 244 SMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAV 303
Query: 288 AVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDT 347
+++HE +SLT+EK + ++ F + + + H GIFYL+ KG R TV L++
Sbjct: 304 SIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREA 363
Query: 348 YLGSNLIDKCPLLEFNNKFVALCGRRNTDLCDSNNSLQTK 387
Y LI P+ + + + L L N+ L K
Sbjct: 364 YERGCLIHPNPVYDARRRLLDLVALERRGLPAVNSKLHDK 403
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 23/243 (9%)
Query: 137 LRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVR----GRDFLHL 192
L +LLML R+P+ +E + ++GLP D+ L+A YP +F + V G++ L L
Sbjct: 130 LARLLMLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLAL 189
Query: 193 E--DWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPN 250
E W L+V+ E R V+ + D+R+ I F + P F
Sbjct: 190 ELVSWRKELSVSELEKR-----VMGFNYDADKRRHDIQ----------FPMFLPKSFALE 234
Query: 251 VGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAF 310
+E WQ L + SPY NA D ++ K VA++HELLSL + K+ S L +
Sbjct: 235 KRVKTWVEGWQTLPYISPYENAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICY 294
Query: 311 HSECF-LPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVAL 369
EC L S+ L+ H GIFYL+NK T +L++ Y L+ P++ ++ L
Sbjct: 295 -GECLGLGSRFKKALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPVMGTRYWYIHL 353
Query: 370 CGR 372
+
Sbjct: 354 MTK 356
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 139 KLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSS 198
KLLM+ ++PL ++ + +LGLP D+ + +I ++P F + V L L W
Sbjct: 138 KLLMIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNNAVLELVCWSKK 197
Query: 199 LAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLE 258
+V+ E + K G +G F V F GF + Y + ++
Sbjct: 198 HSVSFLEKKYGD---------------KAKGQGKELG---FPVQFSTGFEMDKKYEKWVK 239
Query: 259 RWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPS 318
W L + SPY N + +S K V V+HE+L+L + K+ + L S
Sbjct: 240 EWNGLRYVSPYENGVNLSGSSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLAS 299
Query: 319 QLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGRRNTDLC 378
+ +++H GIFY+++K TV+L+D Y L++ P +EF +++ L NT
Sbjct: 300 RFKRVILQHPGIFYVSSKNRMYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLM---NTVKE 356
Query: 379 DSNNSLQTK 387
DS N K
Sbjct: 357 DSKNDKSEK 365
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 110/241 (45%), Gaps = 52/241 (21%)
Query: 139 KLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRR--VRGRDFLHLEDWD 196
+LLM+ VD RV L+ + + GLP DF + KYPQ F + + + +FL L W+
Sbjct: 120 RLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWN 179
Query: 197 SSLAVTAREAR--LAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF-RPNVGY 253
S A+T E + + EGV T+ G PF K FPA F R + Y
Sbjct: 180 SEWAITEIEKKNKMIMEGVTETEHTP----------GLLSLPFPLK--FPANFKRVHSYY 227
Query: 254 LQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSE 313
++++ +Q+ + SPY +A+ + KRAVAV+HELLS T+EKR
Sbjct: 228 GEKIKMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKR------------ 275
Query: 314 CFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGRR 373
G R +V L + Y GS LI+K PL + K ++L G R
Sbjct: 276 -----------------------GKRFSVFLTEAYEGSELIEKSPLFLWREKLLSLVGYR 312
Query: 374 N 374
Sbjct: 313 G 313
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 145/356 (40%), Gaps = 39/356 (10%)
Query: 26 SSGGRRPKKKTYHRVPELDRVMELRKKPLMILQLKTLIQSQPRNSPLFLRD---LEKNVG 82
SS P + +RV +++++ + + K + +QP + L L D L + +G
Sbjct: 46 SSPRTNPIQTEPNRVTAFEQIVKRETLMRFVTRSKNYLSNQPEHV-LQLDDAGKLHRELG 104
Query: 83 FVRKWDFMALIERHPTIF---RVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRK 139
F R I++HP +F R TD ME V +RK
Sbjct: 105 FPRGRKIAKSIQQHPPLFLTYRHTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRK 164
Query: 140 LLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAI---------RRVRGRDFL 190
LLM+ R+ L + V G+P DF + + KYP +F I ++VR L
Sbjct: 165 LLMMSRFHRISLAKIHHVRNLFGIPDDFRDR-VEKYPNYFRIVDDKNKDDGKKVR---VL 220
Query: 191 HLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPN 250
L +WD LAV+A E N+D K K F F V
Sbjct: 221 ELVNWDPLLAVSAIEKEFM--------VNEDDAKRK----------FTFPVKHGKDLELG 262
Query: 251 VGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAF 310
+ +++ L SPY + +FDV ++ K V +IHE LSLT+EKR + L F
Sbjct: 263 IEDERKMNLLNALPLVSPYSDGAKFDVWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEF 322
Query: 311 HSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSN-LIDKCPLLEFNNK 365
E L L+K FYL + V LK+ Y + LI K P + FN K
Sbjct: 323 KEEFSLTKHTYHMLVKQPRAFYLAGTEMNWVVFLKEGYDRNGVLIHKDPQVVFNEK 378
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 155/351 (44%), Gaps = 45/351 (12%)
Query: 43 LDRVMELRKKPLMILQLKTLIQSQPRNSPLFLRDLEKNVGFV---RKWDFMALIERHPTI 99
LDR + +R + + +LKTL+ S+P++ L ++ L K ++ + +++I R+P+I
Sbjct: 62 LDRHVVMRNRIRFVQKLKTLLLSKPKHF-LPIKILSKCRAYLSLHKPRSLLSMIHRYPSI 120
Query: 100 FRVAGAP--PS------------VSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCV 145
F + P P+ V LT + VL L+KLLML
Sbjct: 121 FELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLMLSS 180
Query: 146 DCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTARE 205
R+ L L + +LGLP +F L +P F I L L WD++LA
Sbjct: 181 HRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDTNLA----- 235
Query: 206 ARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFK-VNFPAGF---RPNVGYLQQLERWQ 261
P ++ + + D P FK + G RP+ YL + E
Sbjct: 236 ---------KPLPPRESHSLDLIVD----RPLKFKQLRLRKGLNLKRPHRDYLLKFEEMP 282
Query: 262 KLEFPSPYLNARRFDVADP-KSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQL 320
++ PY N + ++ KR AVI E+L +T+EKR L F E LP++L
Sbjct: 283 EV---CPYNNPAESSTKESIEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKL 339
Query: 321 LLCLIKHQGIFYLTNKGVRSTVLLKDTY-LGSNLIDKCPLLEFNNKFVALC 370
+++H +FY + KG R +V L + + NL++K +L +K++ L
Sbjct: 340 RGMIVRHPELFYTSLKGQRDSVFLVERFDEKGNLLEKDEVLALQDKWMDLA 390
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 61/283 (21%)
Query: 90 MALIERHPTIFRVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRV 149
+ I ++P+ F+ V LT + +E V V L KLLML ++ +
Sbjct: 80 LNWISKYPSCFQFH--QDHVLLTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLNNCL 137
Query: 150 PLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD---FLHLEDWDSSLAVTAREA 206
+ + + GLP D+ ++AKY F IR GR + L W+ AV+ EA
Sbjct: 138 NVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 197
Query: 207 RLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLE-- 264
+ GV +VNF + +++ LE++++ E
Sbjct: 198 LAMKNGV--------------------------EVNFSCCLPSS--WVKSLEKFREFELV 229
Query: 265 -FPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
+ SPY + RR + KR + ++HELLSLT+ K+++ +L F
Sbjct: 230 PYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHF------------- 276
Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
+G+F+ L+++ Y+GS L+DK PL+ KF
Sbjct: 277 ---KKGVFF---------CLIREGYVGSQLVDKNPLVAVKEKF 307
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 160/400 (40%), Gaps = 58/400 (14%)
Query: 6 VSFLTA---KNPRATVVGCIRHKSSGGRRPKKKTYHRVPELDRVMELRKKPLMILQLKTL 62
V+FLT +N + + +R K++ + + R P +++M+ K L ++ + L
Sbjct: 20 VNFLTQHKHQNQQQPLCVFVRSKTTSIQYVNSRA--RDPTFEKLMDKYKNLLKVIAVHDL 77
Query: 63 IQSQPRNSPL---FLRDLEKNVGFVRKWDFMALIERHPTIFRVAGAP----PSVSLTDKX 115
I + P+N + FL +L + + R A + + P IF + P P LTD
Sbjct: 78 ILANPKNRSVSVDFLSNLSQRLHLNR--GATAFLRKFPHIFNIYYEPSKLQPFCRLTDAA 135
Query: 116 XXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKY 175
P++V L ++L + VPL + F+ C +
Sbjct: 136 LDVSRQEAEAINTSLPLVVERLVRILSMSASKTVPLRAV------------FKLCDADE- 182
Query: 176 PQFFAIRRVRGRDFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVG 235
Q + ++ G D SS A E D R V+ +D + V
Sbjct: 183 -QNTHLLKLVG-------DVPSSGFRAAVE---------------DWRVVECCKDESSVN 219
Query: 236 P----FAFKVNFPAGFRPNVGYLQQLERWQKLEFPSPYL----NARRFDVADPKSRKRAV 287
++FK +P G R + + ++ WQ L + PY + KRAV
Sbjct: 220 SMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAV 279
Query: 288 AVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDT 347
+++HE +SLT+EK + ++ F + + + H GIFYL+ KG R TV L++
Sbjct: 280 SIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREA 339
Query: 348 YLGSNLIDKCPLLEFNNKFVALCGRRNTDLCDSNNSLQTK 387
Y LI P+ + + + L L N+ L K
Sbjct: 340 YERGCLIHPNPVYDARRRLLDLVALERRGLPAVNSKLHDK 379
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 137 LRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVR----GRDFLHL 192
L +LLML R P+ +E + ++GLP D+ L+A YP +F + V G++ L L
Sbjct: 84 LSRLLMLAGMARFPIYVIEKLKWDMGLPHDYVTTLLAHYPDYFDVCVVEDPLSGKEVLAL 143
Query: 193 ED--WDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPN 250
E W L+V+ E R V+ D R+ I F + P F
Sbjct: 144 EFVLWRKELSVSELEKR-----VMGFNYGADNRRYDIQ----------FPMFLPKSFALE 188
Query: 251 VGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEK 300
+E WQ L + SPY NA D ++ K +VA++HELLSL + K
Sbjct: 189 KRVKTWVEGWQTLPYISPYENAFHLDSNSDQAEKWSVAILHELLSLLVSK 238
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 21/283 (7%)
Query: 92 LIERHPTIFRVAGAP----PSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDC 147
+ ++P+IF P P LT + L + L+K++++ +
Sbjct: 108 FLRQYPSIFEEFTGPKYNHPWFRLTPEAAEIDRDEKRVYEESREELRSRLKKMILMTKEN 167
Query: 148 RVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTAREAR 207
+PL+ ++ + LGLP DF + F F+ +ED LA+ +RE
Sbjct: 168 VLPLKIIQGMQWYLGLPHDFLQHHEQNLDDSFR--------FVEMEDGLKGLAIESRER- 218
Query: 208 LAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPA-GFRPNVGYLQQLERWQKLEFP 266
+ + ++ K + DG+ F FP+ R L +QKL +
Sbjct: 219 ------VYSVMEENAMKKGMYYDGSQTEAIEFPF-FPSKALRMKTKIENWLHEFQKLPYI 271
Query: 267 SPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIK 326
SPY + D + KR + V+HELLSL ++ +L P ++ +
Sbjct: 272 SPYDDFSNLDPNSDIAEKRLIGVLHELLSLFIDHSAERRKLLCLKKYFGFPQKVHRAFER 331
Query: 327 HQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVAL 369
H +FY++ + TV+LK+ Y I+ PLL +++ L
Sbjct: 332 HPHMFYMSMRNKTCTVILKEAYCNELAIENHPLLSVRKRYIKL 374