Miyakogusa Predicted Gene

Lj0g3v0309809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0309809.1 Non Characterized Hit- tr|I3T378|I3T378_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,92.31,1e-18,
,NODE_53309_length_295_cov_81.189827.path2.1
         (52 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g116570.1 | D111/G-patch domain protein | HC | chr4:483194...    47   5e-06
Medtr4g116570.2 | D111/G-patch domain protein | HC | chr4:483195...    47   5e-06

>Medtr4g116570.1 | D111/G-patch domain protein | HC |
           chr4:48319492-48325883 | 20130731
          Length = 798

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 6/53 (11%)

Query: 1   MALPIKVIQRPKSLDLGVQFSSSPDEPATE--GAMIK----SSRIGALENIPK 47
           MA PI+VIQRPKSL LGV+FSS+ D+P  +  G   K    SSR+G+ E   K
Sbjct: 659 MAQPIEVIQRPKSLGLGVEFSSNVDDPTRDSIGTSKKHTKSSSRVGSSEKRTK 711


>Medtr4g116570.2 | D111/G-patch domain protein | HC |
           chr4:48319548-48326239 | 20130731
          Length = 783

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 6/53 (11%)

Query: 1   MALPIKVIQRPKSLDLGVQFSSSPDEPATE--GAMIK----SSRIGALENIPK 47
           MA PI+VIQRPKSL LGV+FSS+ D+P  +  G   K    SSR+G+ E   K
Sbjct: 659 MAQPIEVIQRPKSLGLGVEFSSNVDDPTRDSIGTSKKHTKSSSRVGSSEKRTK 711