Miyakogusa Predicted Gene

Lj0g3v0309399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0309399.1 tr|G3GRH6|G3GRH6_CRIGR RNA polymerase-associated
protein LEO1 OS=Cricetulus griseus GN=I79_000125
PE,42.31,0.00000001,seg,NULL; SUBFAMILY NOT NAMED,NULL; LEO1
PROTEIN,NULL; Leo1,Leo1-like
protein,NODE_13333_length_1668_cov_92.332733.path3.1
         (242 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g024360.1 | RNA polymerase-associated Leo1-like protein | ...   341   4e-94
Medtr3g024380.1 | RNA polymerase-associated Leo1-like protein | ...   338   2e-93

>Medtr3g024360.1 | RNA polymerase-associated Leo1-like protein | HC
           | chr3:7530544-7522073 | 20130731
          Length = 607

 Score =  341 bits (874), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 184/242 (76%), Gaps = 1/242 (0%)

Query: 1   MNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRNPDGTKSV 60
           MN+ KVSNIMGVDPKPFDPKTY EEDTFVTDE G KKRIRLENNIVRWR V NPDGT SV
Sbjct: 240 MNVFKVSNIMGVDPKPFDPKTYEEEDTFVTDEFGNKKRIRLENNIVRWRKVTNPDGTTSV 299

Query: 61  ESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMP 120
           ESNARFVRWSDGS+QLLIGNEVLD+S QDAQHDQAHLFLRHGKG+LQSQG+L RKM+FMP
Sbjct: 300 ESNARFVRWSDGSIQLLIGNEVLDVSEQDAQHDQAHLFLRHGKGILQSQGQLSRKMKFMP 359

Query: 121 SSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXXXSQTIRANVILNRKRE 180
           SSL+SNSHRLLTA+VDSR +K  K+KNC+TDIDP           SQTIRANV+L RKRE
Sbjct: 360 SSLSSNSHRLLTAIVDSRQRKAVKIKNCVTDIDPEREKEEKEKAESQTIRANVLLTRKRE 419

Query: 181 KLSRKYTPAVERRRQLSPGFXXXXXXXXXXXXXXXSRPSQXXXXXXXXXXXXXXXXIMNA 240
           K++RKYTP  ERRRQLSPGF               SR +Q                IMNA
Sbjct: 420 KVNRKYTP-TERRRQLSPGFLEDALDEDEEADYYDSRRTQRHYEEDFEAEVRAEKRIMNA 478

Query: 241 KK 242
           KK
Sbjct: 479 KK 480


>Medtr3g024380.1 | RNA polymerase-associated Leo1-like protein | HC
           | chr3:7538346-7546058 | 20130731
          Length = 607

 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 183/242 (75%), Gaps = 1/242 (0%)

Query: 1   MNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRNPDGTKSV 60
           MN+ KVSNIMGVDPKPFDPKTY EEDTFVTDE G KKRIRLENNIVRWR V NPDGT SV
Sbjct: 240 MNVFKVSNIMGVDPKPFDPKTYEEEDTFVTDEFGNKKRIRLENNIVRWRKVTNPDGTTSV 299

Query: 61  ESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMP 120
           ESNARFVRWSDGS+QLLIGNEVLD+S QDAQHDQAHLFLRHGKG+LQSQG+L RKM+FMP
Sbjct: 300 ESNARFVRWSDGSIQLLIGNEVLDVSEQDAQHDQAHLFLRHGKGILQSQGQLSRKMKFMP 359

Query: 121 SSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXXXSQTIRANVILNRKRE 180
           SSL+SNSHRLLTA+VDSR +K  K+KNC+TDIDP           SQTIRANV+L RKRE
Sbjct: 360 SSLSSNSHRLLTAIVDSRQRKAVKIKNCVTDIDPEREKEEKEKAESQTIRANVLLTRKRE 419

Query: 181 KLSRKYTPAVERRRQLSPGFXXXXXXXXXXXXXXXSRPSQXXXXXXXXXXXXXXXXIMNA 240
           K++RKYTP  E RRQLSPGF               SR +Q                IMNA
Sbjct: 420 KVNRKYTP-TESRRQLSPGFLEDALDEDEEADYYDSRRTQRHYEEDFEAEVRAEKRIMNA 478

Query: 241 KK 242
           KK
Sbjct: 479 KK 480