Miyakogusa Predicted Gene
- Lj0g3v0308719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0308719.1 tr|G7JMP2|G7JMP2_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_4g10,53,1e-18,seg,NULL; zf-CCCH,Zinc finger, CCCH-type; ZINC
FINGER CCCH DOMAIN-CONTAINING PROTEIN,NULL; PROTEIN P,CUFF.20856.1
(190 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g104260.1 | zinc finger C-x8-C-x5-C-x3-H type family prote... 75 4e-14
Medtr3g075190.1 | zinc finger CCCH domain protein | HC | chr3:34... 69 2e-12
Medtr4g119280.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC... 54 6e-08
Medtr1g088875.2 | zinc finger C-x8-C-x5-C-x3-H type protein | HC... 48 5e-06
Medtr1g088875.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC... 48 5e-06
Medtr1g088875.3 | zinc finger C-x8-C-x5-C-x3-H type protein | HC... 48 5e-06
>Medtr4g104260.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
| HC | chr4:43094920-43090696 | 20130731
Length = 573
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 18/97 (18%)
Query: 110 MTNPATETN---DHQKKIXXXXXXXXXXXXXCRSYLETGDCKSKSDC-----------LP 155
M NP +TN HQK++ C +++TGDCK KS+C LP
Sbjct: 436 MNNPTIDTNVYMHHQKQMPFEVFPERPGEPECSFFIKTGDCKFKSNCKFHHPKNRVAKLP 495
Query: 156 LQNLSDKGLPLRPDQNVCSHYS----CKFESACKYPY 188
NLSDKGLPLRPDQ+VCSHYS CKF AC++ +
Sbjct: 496 PCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDH 532
>Medtr3g075190.1 | zinc finger CCCH domain protein | HC |
chr3:34208143-34204008 | 20130731
Length = 511
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 52/107 (48%), Gaps = 26/107 (24%)
Query: 106 SERSM--------TNPATETNDH---QKKIXXXXXXXXXXXXXCRSYLETGDCKSKSDC- 153
SERSM NPA E N + K C +L+TGDCK KS C
Sbjct: 366 SERSMHPPSPYAVNNPAMEMNAYMHRHKHTPVEEFPERPGEPECSFFLKTGDCKFKSHCK 425
Query: 154 ----------LPLQNLSDKGLPLRPDQNVCSHYS----CKFESACKY 186
LP NLSDKGLPLRP QNVC+HYS CKF ACKY
Sbjct: 426 FHHPKNRITKLPPCNLSDKGLPLRPGQNVCTHYSRYGICKFGPACKY 472
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 62 KTGDCKEATERSTEV-CRYYQRYGVCKYGKDCWYIHTRGN-SFDQASERSMTNPATETND 119
+ G+ E ERS++ C+YY R G CK+GKDC + HTRG S DQ E + +
Sbjct: 211 RAGERDELEERSSQTECKYYSRSGGCKFGKDCKFDHTRGKFSADQVLELNFLGLPIRLGE 270
Query: 120 HQKKIXXXXXXXXXXXXXCRSYLETGDCKSKSDC 153
+ C Y+ TG CK ++C
Sbjct: 271 KE----------------CPYYMRTGSCKFGANC 288
>Medtr4g119280.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC |
chr4:49394887-49390580 | 20130731
Length = 511
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%), Gaps = 13/62 (20%)
Query: 138 CRSYLETGDCKSKSDC---------LPLQNLSDKGLPLRPDQNVCSHYS----CKFESAC 184
C+ Y++TGDCK S C P NLS GLPLRP C+HY+ CKF SAC
Sbjct: 339 CQHYMKTGDCKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGAQPCTHYTQRGFCKFGSAC 398
Query: 185 KY 186
K+
Sbjct: 399 KF 400
>Medtr1g088875.2 | zinc finger C-x8-C-x5-C-x3-H type protein | HC |
chr1:39809788-39813799 | 20130731
Length = 351
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 31/125 (24%)
Query: 77 CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXXXXXXXXX 136
C YY R G C YG C + H R ++ T D+ +++
Sbjct: 55 CAYYMRTGFCGYGGRCRFNHPR-------DRAAVAAAVRATGDYPERL---------GEP 98
Query: 137 XCRSYLETGDCKSKSDC-----------LPLQNLSDKGLPLRPDQNVCSHY----SCKFE 181
C+ YL+TG CK + C L L+ G PLRP ++ CS+Y CKF
Sbjct: 99 PCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFG 158
Query: 182 SACKY 186
CK+
Sbjct: 159 VTCKF 163
>Medtr1g088875.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC |
chr1:39809788-39813738 | 20130731
Length = 348
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 31/125 (24%)
Query: 77 CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXXXXXXXXX 136
C YY R G C YG C + H R ++ T D+ +++
Sbjct: 55 CAYYMRTGFCGYGGRCRFNHPR-------DRAAVAAAVRATGDYPERL---------GEP 98
Query: 137 XCRSYLETGDCKSKSDC-----------LPLQNLSDKGLPLRPDQNVCSHY----SCKFE 181
C+ YL+TG CK + C L L+ G PLRP ++ CS+Y CKF
Sbjct: 99 PCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFG 158
Query: 182 SACKY 186
CK+
Sbjct: 159 VTCKF 163
>Medtr1g088875.3 | zinc finger C-x8-C-x5-C-x3-H type protein | HC |
chr1:39809788-39813831 | 20130731
Length = 344
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 31/125 (24%)
Query: 77 CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXXXXXXXXX 136
C YY R G C YG C + H R ++ T D+ +++
Sbjct: 55 CAYYMRTGFCGYGGRCRFNHPR-------DRAAVAAAVRATGDYPERL---------GEP 98
Query: 137 XCRSYLETGDCKSKSDC-----------LPLQNLSDKGLPLRPDQNVCSHY----SCKFE 181
C+ YL+TG CK + C L L+ G PLRP ++ CS+Y CKF
Sbjct: 99 PCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFG 158
Query: 182 SACKY 186
CK+
Sbjct: 159 VTCKF 163