Miyakogusa Predicted Gene

Lj0g3v0308169.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308169.1 tr|A9S8E7|A9S8E7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,66.67,4e-19,seg,NULL,CUFF.20797.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069240.1 | plant/F16A16-150 protein, putative | HC | chr1...   129   1e-30
Medtr7g108590.1 | TPR repeat protein | HC | chr7:44238334-442423...    55   2e-08

>Medtr1g069240.1 | plant/F16A16-150 protein, putative | HC |
           chr1:29822607-29820040 | 20130731
          Length = 333

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 61/62 (98%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDG 141
           WLDEQKK+AGVSS+SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKG+WTGLLDG DG
Sbjct: 272 WLDEQKKMAGVSSDSPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWTGLLDGMDG 331

Query: 142 RV 143
           RV
Sbjct: 332 RV 333



 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 11/71 (15%)

Query: 1  MALA-FGSVTPNSNNTFYLTLTLPKSPPRNLINNHR-NFFSGNKGVSYG--HNLFYTDPR 56
          MALA FGS + NSN  F   LTLP +PP   I+NHR NF   +  +SYG  H L+Y+   
Sbjct: 1  MALATFGSTSANSNTLF---LTLP-TPPPCFIHNHRTNFMFSSSRLSYGHTHTLYYSH-- 54

Query: 57 TRRASLATILC 67
           +R+S+ TI+C
Sbjct: 55 -QRSSVPTIVC 64


>Medtr7g108590.1 | TPR repeat protein | HC | chr7:44238334-44242357
           | 20130731
          Length = 446

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGL 135
           W+ +Q+K  GV     VY+ LRLDGRVR SG G P W+    +LPP++ + + L
Sbjct: 391 WIRDQQKSEGVPVGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKL 444