Miyakogusa Predicted Gene

Lj0g3v0308159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308159.1 tr|A9SPD7|A9SPD7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_133111,75.86,1e-17,PSI_PsaE,Photosystem I PsaE, reaction
centre subunit IV; no description,NULL;
PSAE_SPIOL_P12354;,Pho,CUFF.20854.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069235.1 | photosystem I reaction center subunit IV A | H...   110   2e-25
Medtr7g099390.1 | photosystem I reaction center subunit IV A | H...   102   1e-22

>Medtr1g069235.1 | photosystem I reaction center subunit IV A | HC |
           chr1:29816886-29819066 | 20130731
          Length = 148

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/53 (98%), Positives = 52/53 (98%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRF KVNYANVSTNNYAL
Sbjct: 89  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFQKVNYANVSTNNYAL 141


>Medtr7g099390.1 | photosystem I reaction center subunit IV A | HC |
           chr7:39853569-39852234 | 20130731
          Length = 138

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 50/53 (94%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RG+KVK+LRKESYW+ G GSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYAL
Sbjct: 79  RGAKVKVLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL 131