Miyakogusa Predicted Gene

Lj0g3v0307769.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307769.1 Non Characterized Hit- tr|I3SWY0|I3SWY0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.79,0,WD40
repeat-like,WD40-repeat-containing domain; seg,NULL; SUBFAMILY NOT
NAMED,NULL; NUCLEASE-RELATED,CUFF.20768.1
         (218 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g087280.1 | eukaryotic translation initiation factor eIF2A...   371   e-103
Medtr4g087280.2 | eukaryotic translation initiation factor eIF2A...   357   7e-99
Medtr5g091610.1 | eukaryotic translation initiation factor eIF2A...   125   3e-29
Medtr2g088350.1 | helicase family carboxy-terminal domain protei...    76   2e-14
Medtr3g105430.1 | eukaryotic translation initiation factor 3 sub...    68   7e-12

>Medtr4g087280.1 | eukaryotic translation initiation factor
           eIF2A-like protein | HC | chr4:34234169-34228705 |
           20130731
          Length = 516

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/196 (88%), Positives = 185/196 (94%)

Query: 1   MPAKATLFDKNCNPLLELGTGPYNTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAA 60
           MPAKATLFDK C PLLELGTGPYNTIRWNPKG+FLCLAGFGNLPGDMVFWDY ++KQLA+
Sbjct: 297 MPAKATLFDKKCRPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYVERKQLAS 356

Query: 61  TKVEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPES 120
           TK EWSV+SEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFK+MFDKL+QADWKPES
Sbjct: 357 TKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPES 416

Query: 121 PSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQASTKASSANPPAQKPAAYCPPLAKTAA 180
           PSKFGDI ELIKS+DS+KLEDKKPSGQGPKPTQ STKASSANP AQKPAAY PP AKTAA
Sbjct: 417 PSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTAA 476

Query: 181 VIQAQLLGESPSETLS 196
            IQA+LLGES +E+LS
Sbjct: 477 AIQAELLGESSAESLS 492


>Medtr4g087280.2 | eukaryotic translation initiation factor
           eIF2A-like protein | HC | chr4:34234038-34228705 |
           20130731
          Length = 504

 Score =  357 bits (915), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 165/186 (88%), Positives = 176/186 (94%)

Query: 1   MPAKATLFDKNCNPLLELGTGPYNTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAA 60
           MPAKATLFDK C PLLELGTGPYNTIRWNPKG+FLCLAGFGNLPGDMVFWDY ++KQLA+
Sbjct: 297 MPAKATLFDKKCRPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYVERKQLAS 356

Query: 61  TKVEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPES 120
           TK EWSV+SEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFK+MFDKL+QADWKPES
Sbjct: 357 TKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPES 416

Query: 121 PSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQASTKASSANPPAQKPAAYCPPLAKTAA 180
           PSKFGDI ELIKS+DS+KLEDKKPSGQGPKPTQ STKASSANP AQKPAAY PP AKTAA
Sbjct: 417 PSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTAA 476

Query: 181 VIQAQL 186
            IQA++
Sbjct: 477 AIQAEV 482


>Medtr5g091610.1 | eukaryotic translation initiation factor eIF2A |
           LC | chr5:39950473-39954377 | 20130731
          Length = 270

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 5/73 (6%)

Query: 42  NLPGDMVFWDYADKKQLAATKVEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGS 101
           N  G M FWDY ++KQL     EWSV+SEWSP+GCYFMTATT PRLQVDNGIK+FHYNGS
Sbjct: 126 NQQGGMYFWDYVERKQL-----EWSVSSEWSPNGCYFMTATTTPRLQVDNGIKMFHYNGS 180

Query: 102 LYFKKMFDKLFQA 114
           LYFK+MFDKL+Q+
Sbjct: 181 LYFKQMFDKLYQS 193


>Medtr2g088350.1 | helicase family carboxy-terminal domain protein |
           LC | chr2:37222042-37223590 | 20130731
          Length = 184

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 38/39 (97%)

Query: 107 MFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPS 145
           MFDKL+QADWKPESPSKFGD+ ELIKS+DS+KLEDKKPS
Sbjct: 1   MFDKLYQADWKPESPSKFGDMTELIKSLDSIKLEDKKPS 39


>Medtr3g105430.1 | eukaryotic translation initiation factor 3
           subunit B | HC | chr3:48618144-48613776 | 20130731
          Length = 716

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 24  NTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAATKVEWSVTSEWSPDGCYFMTATT 83
           N + W+P GRF+ LAG     G + F++  + + +A T+  ++   EW P G Y  TA T
Sbjct: 516 NALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMANTEHFYATDVEWDPTGRYVATAVT 575

Query: 84  APRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESPSKF 124
           +   +++NG  I+ +NG   ++ + D  FQ  W+P  P+ F
Sbjct: 576 SVH-EMENGFNIWSFNGKHLYRILKDHFFQFLWRP-RPASF 614