Miyakogusa Predicted Gene

Lj0g3v0307219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307219.1 Non Characterized Hit- tr|I1M3U8|I1M3U8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,59.57,0.0000000000002, ,CUFF.20724.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g046147.1 | hypothetical protein | HC | chr4:16303837-1630...   114   3e-26

>Medtr4g046147.1 | hypothetical protein | HC |
           chr4:16303837-16302675 | 20130731
          Length = 110

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 1   MTTLVRNTTASISRRYRYELIGLQGKDK-LKSISYRRKRAKQRKIFLTTYTLSSLNGFVE 59
           M TLVRNTT + SRR  YEL+GLQGK+K LKS+SYRR+RAKQRKIFLTTY LSSLN FVE
Sbjct: 1   MNTLVRNTTLTFSRRQGYELLGLQGKEKTLKSVSYRRRRAKQRKIFLTTYKLSSLNTFVE 60

Query: 60  XXX-XXXXXXXXXXXXXXXXXXMFMRTGSFSRSCNSRSAISAKSP 103
                                 +FMRTGSF RSCNS+SAISA SP
Sbjct: 61  QPKRPKIKRVAVKVKKIVNSVLLFMRTGSF-RSCNSKSAISASSP 104