Miyakogusa Predicted Gene

Lj0g3v0307049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307049.1 tr|Q9SGX9|Q9SGX9_ARATH F20B24.14 OS=Arabidopsis
thaliana PE=4 SV=1,30.3,0.000000003,seg,NULL,CUFF.20701.1
         (299 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079800.1 | synapsis 1-like protein, putative | HC | chr2:...   342   4e-94
Medtr8g069560.1 | synapsis 1-like protein, putative | HC | chr8:...   334   6e-92

>Medtr2g079800.1 | synapsis 1-like protein, putative | HC |
           chr2:33634232-33630997 | 20130731
          Length = 295

 Score =  342 bits (876), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/299 (61%), Positives = 207/299 (69%), Gaps = 9/299 (3%)

Query: 1   MAGTLALVS--MRDQWEISFARFIPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIX 58
           MAGT+A+ S  + D+WEISFARFIP+                               WI 
Sbjct: 1   MAGTVAVRSNSLSDEWEISFARFIPFPHSSITSSSSSSDLHPLPVRIRNRPPRGT--WIS 58

Query: 59  XXXXXAAFLRLSPDLSASDTILTVSFNSKHLEEHYVSKLLFSWPQVSCVPELPARGIRTV 118
                +AFLR S DL+ SD +LTV+FN+K LEEHYVSKL FSWPQVSC P  PARGIRTV
Sbjct: 59  SST--SAFLRFSSDLNFSDVVLTVAFNAKLLEEHYVSKLNFSWPQVSCDPGFPARGIRTV 116

Query: 119 LVSYRDSAGEIQKFALRFPSIYETQSFINALKEILKDEKDPEPLNTDFGXXXXXXXXXXX 178
           LVSYRDS GEIQKFA+RFPSIYETQSFI ALKEILKD K+PEPLN DFG           
Sbjct: 117 LVSYRDSRGEIQKFAMRFPSIYETQSFIGALKEILKDNKEPEPLNIDFGSEISSQSEFMS 176

Query: 179 XNKRAHRSCEELSFMTPLDNYVPQMPLRINN-GEQPS--GTQEKETTPAQKFDGTLPALP 235
            NK ++R  EELSFMTP D Y+PQ+P+ +NN G QPS  G+Q KET P   F+  LPALP
Sbjct: 177 TNKHSYRPSEELSFMTPADTYIPQIPICMNNEGVQPSGLGSQNKETAPVHNFESILPALP 236

Query: 236 PSFATLLMDCSEVKHAQPTVSEEIDLKSQIVRYMEDSSFHDMLVKVEKVIHEIGGDMSL 294
           PSFA+ LMD S +  AQPTV+EE DLKSQI +YMEDSSF DMLVKVEKVI EIGGDMSL
Sbjct: 237 PSFASFLMDYSGLNPAQPTVTEENDLKSQIAKYMEDSSFQDMLVKVEKVISEIGGDMSL 295


>Medtr8g069560.1 | synapsis 1-like protein, putative | HC |
           chr8:29191612-29194661 | 20130731
          Length = 321

 Score =  334 bits (856), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 209/326 (64%), Gaps = 37/326 (11%)

Query: 1   MAGTLALVS-----MRDQWEISFARFIPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 55
           MAGT+A+ S     + D+WEISFARFIP+                               
Sbjct: 1   MAGTVAVRSTTTNSLSDEWEISFARFIPFPHSSITSSSSSDLHPLPVRLRNRPPRGT--- 57

Query: 56  WIXXXXXXAAFLRLSPDLSASDTILTVSFNSKHLEEHYVSKLLFSWPQVSCVPELPARGI 115
           WI      +AFLR S DL+ SD +LTV+FN+K LEEHYVSKL FSWPQVSC P  PARGI
Sbjct: 58  WISSST--SAFLRFSSDLNFSDVVLTVAFNAKLLEEHYVSKLNFSWPQVSCDPGFPARGI 115

Query: 116 RTVLVSYRDSAGEIQKFALRFPSIYETQSFINALKEILKDEKDPEPLNTDFGXXXXXXXX 175
           RTVLVSYRDS G+IQKFA+RFPSIYETQSFI+ALKEILKD+K+PEPLN DFG        
Sbjct: 116 RTVLVSYRDSRGQIQKFAMRFPSIYETQSFISALKEILKDDKEPEPLNIDFGSEISSQSE 175

Query: 176 XXXXNKR------------------------AHRSCEELSFMTPLDNYVPQMPLRINN-G 210
               NK                         A R  +ELSFMTP D Y+PQMP+ + N G
Sbjct: 176 FMSTNKHSYSFSVPDPTLQKPSEELSFMIPAASRPSQELSFMTPADTYIPQMPICMTNEG 235

Query: 211 EQPS--GTQEKETTPAQKFDGTLPALPPSFATLLMDCSEVKHAQPTVSEEIDLKSQIVRY 268
            QPS  G+Q KET P   F+  LPALPPSFA+ LMDCS + HAQPTV+EE DLKSQI +Y
Sbjct: 236 VQPSGLGSQNKETAPVHNFENILPALPPSFASFLMDCSGLNHAQPTVTEENDLKSQIAKY 295

Query: 269 MEDSSFHDMLVKVEKVIHEIGGDMSL 294
           MEDSSF DMLVKVEKVI EIGGDMSL
Sbjct: 296 MEDSSFQDMLVKVEKVISEIGGDMSL 321