Miyakogusa Predicted Gene

Lj0g3v0306549.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306549.1 tr|A9TLR6|A9TLR6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_108397,35.15,7e-17,no description,YqgF/RNase H-like
domain; Likely ribonuclease with RNase H fold.,YqgF/RNase H-like
do,CUFF.20657.1
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g038850.5 | hypothetical protein | HC | chr5:17088821-1708...    64   9e-11
Medtr5g038850.3 | hypothetical protein | HC | chr5:17088821-1708...    64   9e-11
Medtr5g038850.2 | hypothetical protein | HC | chr5:17088821-1708...    64   1e-10
Medtr5g038850.1 | hypothetical protein | HC | chr5:17085537-1708...    63   2e-10
Medtr5g038850.4 | hypothetical protein | HC | chr5:17085537-1708...    55   5e-08

>Medtr5g038850.5 | hypothetical protein | HC |
           chr5:17088821-17089930 | 20130731
          Length = 146

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNK-IASPFSVLIR----- 93
           M+++ P QL+  + KA     GR++G++VG +Y+GVA+SD +NK +    + L+R     
Sbjct: 1   MKYMLPKQLYQCVCKALP---GRVMGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKS 57

Query: 94  -KKSNIGLMASDFETLISKYSLKGFVIGI----PFNNFRVSPDAVQVKVLIDALSKTKKL 148
            K  +  ++AS+ + LI + ++KG VIG       ++   S D    K  +  L KT   
Sbjct: 58  GKPKSDAVLASELKDLIDRNNVKGMVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTDMF 117

Query: 149 EGLNYTYWNECFTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGY 196
             +NYTY+                    P  S+ IL+KF     L GY
Sbjct: 118 SDMNYTYF--------------------PPRSELILEKF-----LDGY 140


>Medtr5g038850.3 | hypothetical protein | HC |
           chr5:17088821-17089930 | 20130731
          Length = 146

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNK-IASPFSVLIR----- 93
           M+++ P QL+  + KA     GR++G++VG +Y+GVA+SD +NK +    + L+R     
Sbjct: 1   MKYMLPKQLYQCVCKALP---GRVMGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKS 57

Query: 94  -KKSNIGLMASDFETLISKYSLKGFVIGI----PFNNFRVSPDAVQVKVLIDALSKTKKL 148
            K  +  ++AS+ + LI + ++KG VIG       ++   S D    K  +  L KT   
Sbjct: 58  GKPKSDAVLASELKDLIDRNNVKGMVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTDMF 117

Query: 149 EGLNYTYWNECFTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGY 196
             +NYTY+                    P  S+ IL+KF     L GY
Sbjct: 118 SDMNYTYF--------------------PPRSELILEKF-----LDGY 140


>Medtr5g038850.2 | hypothetical protein | HC |
           chr5:17088821-17089930 | 20130731
          Length = 145

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 14/128 (10%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNK-IASPFSVLIR----- 93
           M+++ P QL+  + KA     GR++G++VG +Y+GVA+SD +NK +    + L+R     
Sbjct: 1   MKYMLPKQLYQCVCKALP---GRVMGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKS 57

Query: 94  -KKSNIGLMASDFETLISKYSLKGFVIG----IPFNNFRVSPDAVQVKVLIDALSKTKKL 148
            K  +  ++AS+ + LI + ++KG VIG       ++   S D    K  +  L KT   
Sbjct: 58  GKPKSDAVLASELKDLIDRNNVKGMVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTDMF 117

Query: 149 EGLNYTYW 156
             +NYTY+
Sbjct: 118 SDMNYTYF 125


>Medtr5g038850.1 | hypothetical protein | HC |
           chr5:17085537-17089930 | 20130731
          Length = 179

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNK-IASPFSVLIR----- 93
           M+++ P QL+  + KA     GR++G++VG +Y+GVA+SD +NK +    + L+R     
Sbjct: 34  MKYMLPKQLYQCVCKALP---GRVMGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKS 90

Query: 94  -KKSNIGLMASDFETLISKYSLKGFVIGI----PFNNFRVSPDAVQVKVLIDALSKTKKL 148
            K  +  ++AS+ + LI + ++KG VIG       ++   S D    K  +  L KT   
Sbjct: 91  GKPKSDAVLASELKDLIDRNNVKGMVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTDMF 150

Query: 149 EGLNYTYWNECFTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGY 196
             +NYTY+                    P  S+ IL+KF     L GY
Sbjct: 151 SDMNYTYF--------------------PPRSELILEKF-----LDGY 173


>Medtr5g038850.4 | hypothetical protein | HC |
           chr5:17085537-17089515 | 20130731
          Length = 149

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 10/88 (11%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNK-IASPFSVLIR----- 93
           M+++ P QL+  + KA     GR++G++VG +Y+GVA+SD +NK +    + L+R     
Sbjct: 34  MKYMLPKQLYQCVCKALP---GRVMGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKS 90

Query: 94  -KKSNIGLMASDFETLISKYSLKGFVIG 120
            K  +  ++AS+ + LI + ++KG VIG
Sbjct: 91  GKPKSDAVLASELKDLIDRNNVKGMVIG 118