Miyakogusa Predicted Gene

Lj0g3v0306399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306399.1 Non Characterized Hit- tr|I3T6Q6|I3T6Q6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.49,0,NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT,NULL;
NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RE,CUFF.20970.1
         (396 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069455.1 | NADH-ubiquinone oxidoreductase 39 kDa subunit ...   713   0.0  

>Medtr1g069455.1 | NADH-ubiquinone oxidoreductase 39 kDa subunit |
           HC | chr1:30068857-30075578 | 20130731
          Length = 396

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/396 (84%), Positives = 366/396 (92%)

Query: 1   MQAMARRVVHQSLKPSTSLKSIYPISDHHYGADHERFVSTIATKGVGHLVRKGTGGRSSV 60
           MQA+ RR+ H+SLK ST LKS YPISDH+YG +HER+VSTIATKGVGHLVRKGTGGRSSV
Sbjct: 1   MQAITRRLGHESLKSSTLLKSSYPISDHYYGVNHERYVSTIATKGVGHLVRKGTGGRSSV 60

Query: 61  SGIVATVFGATGFLGRYVVQHLAKMGSQVLVPFRGSEDCHRHLKLMGDLGQVVPMKYNPR 120
           SGIVATVFGATGFLGRYVVQ LAKMGSQVLVPFRGSED  RHLKLMGDLGQ+VPMK+NPR
Sbjct: 61  SGIVATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQIVPMKFNPR 120

Query: 121 DESSVKAVMAKANVVINLIGRDFETRNYSYEQVHYHMADQLARISKEHGGIMRFIQVSCL 180
           DESSVKAVMA+ANVVINLIGRD+ETRN+SYE+VHYHMA++LA+ISKEHGGIMRFIQVSCL
Sbjct: 121 DESSVKAVMARANVVINLIGRDYETRNFSYEEVHYHMAEKLAKISKEHGGIMRFIQVSCL 180

Query: 181 GASPSSPSRMLRAKAAAEEAILRELPEATILKPATMIGTEDRILNRWAHFAKKYSFLPLF 240
           GASPSS SRMLR KAAAEEA+LRELPEATI KPA MIGTEDRILNRWAHFAKKY F+PL 
Sbjct: 181 GASPSSSSRMLRCKAAAEEAVLRELPEATIFKPAVMIGTEDRILNRWAHFAKKYGFIPLM 240

Query: 241 GDGSTKIQPVYVVDVANALTAALKDDGTSMGKVYELGGPEVYTMHELAELMYEVIREWPR 300
           G+G+TKIQPVYVVDVA ALT ALKDDGTSMGK+YELGGPE++T+H+LAE+MY+VIREWPR
Sbjct: 241 GNGNTKIQPVYVVDVAAALTTALKDDGTSMGKIYELGGPEIFTVHQLAEIMYDVIREWPR 300

Query: 301 YVKVPFPIAKALASPRELLINKLPFPLPTPNIFNLDQIRALTTDTVVSENALTFNDLGIN 360
           YV VP PIAKALA+PREL +NKLPFPLP P +FNLDQI A   DTVVSENALTFNDLGI 
Sbjct: 301 YVNVPLPIAKALATPRELFLNKLPFPLPKPEMFNLDQIHAYAADTVVSENALTFNDLGIV 360

Query: 361 PQKLKGYPTEFLISYRKGGPQFGSTISERVSPDAWP 396
           P KLKGYP EFLI YRKGGPQFGSTISE+VSPDAWP
Sbjct: 361 PHKLKGYPIEFLIQYRKGGPQFGSTISEKVSPDAWP 396