Miyakogusa Predicted Gene

Lj0g3v0306279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306279.1 tr|F4HV88|F4HV88_ARATH Ribosomal protein L18ae
family protein OS=Arabidopsis thaliana GN=At1g54217 P,59.38,2e-19,60S
RIBOSOMAL PROTEIN L18A-RELATED,NULL; 60S RIBOSOMAL PROTEIN
L18A,Ribosomal protein L18a; seg,NULL,CUFF.20635.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g018810.1 | ribosomal protein L18ae family protein, putati...   126   4e-30
Medtr4g125770.2 | ribosomal protein L18ae family protein | HC | ...   103   5e-23
Medtr4g125770.3 | ribosomal protein L18ae family protein | HC | ...   102   6e-23
Medtr4g125770.1 | ribosomal protein L18ae family protein | HC | ...   102   6e-23
Medtr4g125770.4 | ribosomal protein L18ae family protein | HC | ...   102   7e-23

>Medtr8g018810.1 | ribosomal protein L18ae family protein,
          putative | HC | chr8:6509862-6506637 | 20130731
          Length = 96

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 67/96 (69%)

Query: 1  MDTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
          M TAD   G+YAPI D E P LGKFDKPLPCFGCGIGWFSFLLGFA PL WYYATILYFG
Sbjct: 1  MATADGIKGDYAPILDPEHPPLGKFDKPLPCFGCGIGWFSFLLGFACPLTWYYATILYFG 60

Query: 61 NYYRKDPRERXXXXXXXXXXXXXXXXVMITIFVIIL 96
          NYY KDPRER                V+ITI VI L
Sbjct: 61 NYYHKDPRERAGLAASAIAALICTITVVITILVIFL 96


>Medtr4g125770.2 | ribosomal protein L18ae family protein | HC |
           chr4:52203886-52198941 | 20130731
          Length = 144

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 53/69 (76%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           D      G+YA +RD E  Q G +DKPLPCFGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 42  DPMAHGKGKYALVRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGN 101

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 102 HYRKDPRER 110


>Medtr4g125770.3 | ribosomal protein L18ae family protein | HC |
           chr4:52204012-52198828 | 20130731
          Length = 147

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 53/69 (76%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           D      G+YA +RD E  Q G +DKPLPCFGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 45  DPMAHGKGKYALVRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGN 104

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 105 HYRKDPRER 113


>Medtr4g125770.1 | ribosomal protein L18ae family protein | HC |
           chr4:52203886-52198941 | 20130731
          Length = 147

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 53/69 (76%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           D      G+YA +RD E  Q G +DKPLPCFGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 45  DPMAHGKGKYALVRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGN 104

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 105 HYRKDPRER 113


>Medtr4g125770.4 | ribosomal protein L18ae family protein | HC |
          chr4:52204012-52198941 | 20130731
          Length = 110

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 53/69 (76%)

Query: 2  DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
          D      G+YA +RD E  Q G +DKPLPCFGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 8  DPMAHGKGKYALVRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGN 67

Query: 62 YYRKDPRER 70
          +YRKDPRER
Sbjct: 68 HYRKDPRER 76