Miyakogusa Predicted Gene

Lj0g3v0305119.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305119.1 tr|B7K9T0|B7K9T0_CYAP7 Probable dual-specificity
RNA methyltransferase RlmN OS=Cyanothece sp.
(strai,44.76,7e-19,seg,NULL; 23S RRNA
METHYLTRANSFERASE,NULL,CUFF.20530.1
         (234 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g064490.1 | 23S rRNA m2A2503 methyltransferase | HC | chr8...   295   3e-80
Medtr5g079860.1 | 23S rRNA m2A2503 methyltransferase | HC | chr5...    79   3e-15
Medtr5g005050.1 | 23S rRNA m2A2503 methyltransferase | HC | chr5...    62   4e-10
Medtr5g005050.2 | 23S rRNA m2A2503 methyltransferase | HC | chr5...    62   6e-10

>Medtr8g064490.1 | 23S rRNA m2A2503 methyltransferase | HC |
           chr8:27050679-27043455 | 20130731
          Length = 449

 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/240 (66%), Positives = 175/240 (72%), Gaps = 31/240 (12%)

Query: 1   MRNWMSMARGVAVANXXXXXXXXXXXXXXXXXXXXNHKTI-SFSFTRTPPPPYLISVLTP 59
           M NWMSMA   A+AN                     HKTI  FS T+T P  +LIS  TP
Sbjct: 1   MMNWMSMATS-ALANSSSTTFLL-------------HKTIIPFSLTKTSP--FLISFTTP 44

Query: 60  RRRLLSSSPAAA-----DHNFSDSGXXXXXXXXXXGHCVSTSMKGSEVLLKGLTYPELEK 114
            RR LS+S   +     D NFS  G          G+ V+ S +GS+VLLKG+TY ELEK
Sbjct: 45  SRRFLSASSLPSLSPDIDFNFSHYGD---------GNSVAVSRRGSKVLLKGMTYSELEK 95

Query: 115 WVQSHGYRPGQAMMLWKRIYGNNIWANHVDELEGINKDFKKMLSENAKFKALALKEIHTA 174
           WVQSHGYRPGQAMMLWKR+YGNNIWA+H DELEG+ KDFK+MLSE+A FKALA+KEIH A
Sbjct: 96  WVQSHGYRPGQAMMLWKRMYGNNIWAHHTDELEGLKKDFKQMLSEHADFKALAVKEIHAA 155

Query: 175 SDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 234
           SDGTRKILFTLDDGLVIETVVIPCD GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA
Sbjct: 156 SDGTRKILFTLDDGLVIETVVIPCDTGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 215


>Medtr5g079860.1 | 23S rRNA m2A2503 methyltransferase | HC |
           chr5:34153185-34158285 | 20130731
          Length = 432

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 95  TSMKGSEVLLKGLTYPELEKWVQSHGYRPGQAMMLWKRIYGNNIWANHVDELEGINKDFK 154
           T++  S+VLL GL+  EL+K     G +  +   L+  IY   +    + E   + + F+
Sbjct: 36  TTIPQSQVLL-GLSETELQKLALDFGQQGFRGKQLYHLIYKRKV--KDIQEFTQVPQAFR 92

Query: 155 KMLSENA-KFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPCD--RG--RTTVCVSS 209
             L E   K     +     A+DGT K+L  L+D  +IETV IP +  +G  R T CVSS
Sbjct: 93  NELEEAGWKVGRSPIFNTVVATDGTVKLLLKLEDNRLIETVGIPVEDEKGSVRLTACVSS 152

Query: 210 QVGCAMNCQFCYTGRMGLKRHL 231
           QVGC + C FC TG+ G  R+L
Sbjct: 153 QVGCPLKCSFCATGKGGFSRNL 174


>Medtr5g005050.1 | 23S rRNA m2A2503 methyltransferase | HC |
           chr5:304658-307368 | 20130731
          Length = 380

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 35/152 (23%)

Query: 111 ELEKWVQSHGYRPGQAMMLWKRIYGNN---------IWANHVDEL-----EGINKDFKKM 156
           EL       G  P    ++WK I+ N+          W  HV  L       +  +FK  
Sbjct: 11  ELRTEFSKTGIDPKFIPIIWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFLRSNFKTP 70

Query: 157 LSENAKFKALALKEI-HTASDGTRKILFTLDDGLVIETVVIPCDRG-------------R 202
           LS        +L  I H++ + T K++  L +G  +E V++  D               R
Sbjct: 71  LSS-------SLDSIFHSSDNVTSKLVIKLQNGEFVEAVIMRYDTRLGKYGGEPRPGGLR 123

Query: 203 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 234
            T+C+SSQVGC M C+FC TG MG K +L++ 
Sbjct: 124 ATLCISSQVGCKMGCKFCATGSMGFKSNLSSG 155


>Medtr5g005050.2 | 23S rRNA m2A2503 methyltransferase | HC |
           chr5:304658-307368 | 20130731
          Length = 345

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 35/152 (23%)

Query: 111 ELEKWVQSHGYRPGQAMMLWKRIYGNN---------IWANHVDEL-----EGINKDFKKM 156
           EL       G  P    ++WK I+ N+          W  HV  L       +  +FK  
Sbjct: 11  ELRTEFSKTGIDPKFIPIIWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFLRSNFKTP 70

Query: 157 LSENAKFKALALKEI-HTASDGTRKILFTLDDGLVIETVVIPCDRG-------------R 202
           LS        +L  I H++ + T K++  L +G  +E V++  D               R
Sbjct: 71  LSS-------SLDSIFHSSDNVTSKLVIKLQNGEFVEAVIMRYDTRLGKYGGEPRPGGLR 123

Query: 203 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 234
            T+C+SSQVGC M C+FC TG MG K +L++ 
Sbjct: 124 ATLCISSQVGCKMGCKFCATGSMGFKSNLSSG 155