Miyakogusa Predicted Gene

Lj0g3v0305019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305019.1 Non Characterized Hit- tr|J3MNQ6|J3MNQ6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G3,30.95,2e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.20522.1
         (224 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089820.1 | DUF4228 domain protein | HC | chr5:39064993-39...   253   8e-68
Medtr3g045790.1 | DUF4228 domain protein | HC | chr3:15021750-15...   207   9e-54
Medtr4g118680.1 | hypothetical protein | HC | chr4:49160704-4916...    55   7e-08

>Medtr5g089820.1 | DUF4228 domain protein | HC |
           chr5:39064993-39064158 | 20130731
          Length = 209

 Score =  253 bits (647), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 139/219 (63%), Positives = 153/219 (69%), Gaps = 17/219 (7%)

Query: 1   MGNAACFQC-XXXXXXXXXXVKLIFWEGTARSLKGRHIAGEIMFEFPDMMVCHADSFFIG 59
           MGNA+   C           VKLIFWEGT+RSLKG+HIAGEIMFEFP+MMVCHADSFFIG
Sbjct: 1   MGNASITLCFNHNTNSSSSIVKLIFWEGTSRSLKGKHIAGEIMFEFPEMMVCHADSFFIG 60

Query: 60  HPIPALSIDDQLMPGQTYFVIPXXXXXXXXXXXXXXXXXXXXXXXXXXNNINKSPIKFGS 119
           HPIP LSIDD+LM GQTYFV+P                             NKSPIKFG 
Sbjct: 61  HPIPVLSIDDELMLGQTYFVLPIDRFAIDTLSVSSISAFGSCP--------NKSPIKFGK 112

Query: 120 CPFQYLKGSDGRVLIKVMPEFITSLI-NKGISNNNGTLGSGSPSSLCSTPELQKHYEQLV 178
           CPF+YLKGS+GRV+IKVMPEFIT LI      NNNGT  S     LCSTPEL+KHYE LV
Sbjct: 113 CPFEYLKGSNGRVVIKVMPEFITGLIYGDKEMNNNGTPYSNG--FLCSTPELKKHYEALV 170

Query: 179 KSKNQVWSPKLETISEYKIRFSVSPCRYIGTLEWKEKEK 217
           KSK+QVWSPKLETI+EYK+RF  SPCR+I   EWKEKEK
Sbjct: 171 KSKDQVWSPKLETITEYKVRF--SPCRFI---EWKEKEK 204


>Medtr3g045790.1 | DUF4228 domain protein | HC |
           chr3:15021750-15020791 | 20130731
          Length = 225

 Score =  207 bits (526), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 123/180 (68%), Gaps = 4/180 (2%)

Query: 20  VKLIFWEGTARSLKGRHIAGEIMFEFPDMMVCHADSFFIGHPIPALSIDDQLMPGQTYFV 79
            KLIFW+G+ R L G+HIAGEI+ E+P+ MVCHADSFFIGHPIP+L ++D+L  G+TYFV
Sbjct: 33  AKLIFWQGSTRLLNGKHIAGEILLEYPETMVCHADSFFIGHPIPSLDLEDELFQGETYFV 92

Query: 80  IPXXXXXXXXXXXXXXXXXXXXXXXXXXNNINKSPIKFGSCPFQYLKGSDGRVLIKVMPE 139
           +P                          ++ NKS IKFG CPF+YLK  DG+VLIKVMPE
Sbjct: 93  LPIHLFSCKTLSVSSLLSFRLHNN----DSNNKSTIKFGECPFEYLKDCDGKVLIKVMPE 148

Query: 140 FITSLINKGISNNNGTLGSGSPSSLCSTPELQKHYEQLVKSKNQVWSPKLETISEYKIRF 199
           FIT L+N G  + +    S   S LCSTPEL+KHYE LVKSK+QVWSPKLETI E K+R 
Sbjct: 149 FITRLVNGGDRSGDDCCISSKSSFLCSTPELKKHYEMLVKSKDQVWSPKLETILENKVRL 208


>Medtr4g118680.1 | hypothetical protein | HC |
           chr4:49160704-49160913 | 20130731
          Length = 69

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 28/38 (73%)

Query: 162 SSLCSTPELQKHYEQLVKSKNQVWSPKLETISEYKIRF 199
           S L  TPEL KHYE LVKS NQ WSPKLETI E KIR 
Sbjct: 8   SFLFGTPELNKHYEMLVKSMNQSWSPKLETILENKIRL 45