Miyakogusa Predicted Gene

Lj0g3v0304929.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304929.3 tr|F2D4L1|F2D4L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,65.28,9e-19,Got1,Vesicle
transport protein, Got1/SFT2-like; UNCHARACTERIZED,Vesicle transport
protein, SFT2-like,CUFF.20515.3
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g026920.2 | Got1/SFT2-like vescicle transporter family pro...   121   1e-28
Medtr1g026920.1 | Got1/SFT2-like vescicle transporter family pro...   117   2e-27
Medtr6g064950.1 | Got1/SFT2-like vescicle transporter family pro...    59   1e-09

>Medtr1g026920.2 | Got1/SFT2-like vescicle transporter family
           protein | HC | chr1:8852374-8858380 | 20130731
          Length = 149

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 67/70 (95%)

Query: 1   MLLSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVV 60
           MLLS+IVFAKPIKFA+LFTFG+L AVGSTAFLLGPAQQ++MM DPVRVFATAI+LGCVV+
Sbjct: 51  MLLSMIVFAKPIKFAVLFTFGNLSAVGSTAFLLGPAQQMEMMFDPVRVFATAIYLGCVVI 110

Query: 61  ALICALWVSP 70
           ALICAL V+P
Sbjct: 111 ALICALLVNP 120


>Medtr1g026920.1 | Got1/SFT2-like vescicle transporter family
           protein | HC | chr1:8852447-8858166 | 20130731
          Length = 162

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 64/66 (96%)

Query: 1   MLLSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVV 60
           MLLS+IVFAKPIKFA+LFTFG+L AVGSTAFLLGPAQQ++MM DPVRVFATAI+LGCVV+
Sbjct: 51  MLLSMIVFAKPIKFAVLFTFGNLSAVGSTAFLLGPAQQMEMMFDPVRVFATAIYLGCVVI 110

Query: 61  ALICAL 66
           ALICAL
Sbjct: 111 ALICAL 116


>Medtr6g064950.1 | Got1/SFT2-like vescicle transporter family
          protein | HC | chr6:24054776-24057625 | 20130731
          Length = 123

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 2/52 (3%)

Query: 21 GHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVVALICALWVSPAL 72
          GH  +  + AFL+GP +Q+ MMLDPVR++ATAI++  +++AL CAL+V   L
Sbjct: 34 GHWCS--TQAFLIGPKRQVSMMLDPVRIYATAIYIASMIIALFCALYVHNKL 83