Miyakogusa Predicted Gene

Lj0g3v0304859.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304859.1 Non Characterized Hit- tr|I1N7F4|I1N7F4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55851
PE,83.25,0,CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL,NULL; CYTOCHROME
C1,Cytochrome c1; Cytochrom_C1,Cytochrom,CUFF.20627.1
         (232 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g023290.1 | cytochrome c1, heme protein | HC | chr6:810997...   317   4e-87
Medtr6g023230.1 | cytochrome c1, heme protein | HC | chr6:808037...   305   3e-83
Medtr6g023280.1 | cytochrome c1, heme protein | HC | chr6:809993...   100   1e-21

>Medtr6g023290.1 | cytochrome c1, heme protein | HC |
           chr6:8109977-8104364 | 20130731
          Length = 307

 Score =  317 bits (813), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 164/209 (78%), Gaps = 7/209 (3%)

Query: 1   MAGGVMLQLLRRKLQPHSLNPSMXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXT 53
           MAGGV  QLLRRKL+ HS NPS                                     T
Sbjct: 1   MAGGVFQQLLRRKLKSHSPNPSSMSSIITKIDGAGSTSNRSFRALALIGAGVSGLLGFAT 60

Query: 54  TASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGV 113
           TASADEAEHGL+ PSYPWPHEGILSSYDHASIRRGHQVY QVCASCHSMSLISYRDLVGV
Sbjct: 61  TASADEAEHGLAAPSYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGV 120

Query: 114 AYTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLS 173
           AYTE EVKAMA EIEVVDGPNDEGEMF+RPGKLSDRFP+PY+NESAARFANGGAYPPDLS
Sbjct: 121 AYTEAEVKAMATEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNESAARFANGGAYPPDLS 180

Query: 174 LITKARHNGQNYVFSLLTGYREPPAGIVI 202
           LITKARHNGQNYVF+LLTGYR+PPAG+VI
Sbjct: 181 LITKARHNGQNYVFALLTGYRDPPAGVVI 209


>Medtr6g023230.1 | cytochrome c1, heme protein | HC |
           chr6:8080377-8075843 | 20130731
          Length = 306

 Score =  305 bits (780), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 164/208 (78%), Gaps = 6/208 (2%)

Query: 1   MAGGVMLQLLRRKLQPHSLNP------SMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT 54
           MAGGV  QLLRRKLQ HSL+P      S                              TT
Sbjct: 1   MAGGVFQQLLRRKLQSHSLSPSVSSIVSKKDGSGSTGSSSLRALALIGAGVSGLLGFATT 60

Query: 55  ASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA 114
           ASADEAEHGL+ P YPWPHEGILSSYDHASIRRGHQVY QVCASCHSMSLISYRDLVGVA
Sbjct: 61  ASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVA 120

Query: 115 YTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLSL 174
           YTEEEVKAMAAEIEV DGPNDEGEMF+RPGKLSDRFP+PYANESAARFANGGAYPPDLSL
Sbjct: 121 YTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSL 180

Query: 175 ITKARHNGQNYVFSLLTGYREPPAGIVI 202
           ITKARHNGQNYVF+LLTGYR+PPAG+ I
Sbjct: 181 ITKARHNGQNYVFALLTGYRDPPAGVSI 208


>Medtr6g023280.1 | cytochrome c1, heme protein | HC |
           chr6:8099938-8099738 | 20130731
          Length = 66

 Score =  100 bits (250), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/57 (77%), Positives = 51/57 (89%)

Query: 125 AEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLSLITKARHN 181
           +EI VVDGPN+EG+MF+ PGKL+DRFP+PY NESAARFANGGA+PPDLSLIT   HN
Sbjct: 2   SEIVVVDGPNNEGKMFTLPGKLNDRFPQPYVNESAARFANGGAFPPDLSLITNMIHN 58